Mercurial > repos > iracooke > tpp_prophets

changeset 7:f80c11ed0182 draft

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Uploaded
author iracooke
date Tue, 11 Mar 2014 20:52:20 -0400
parents 2c81fee69e66
children 475c8212d420
files protein_prophet.xml
diffstat 1 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/protein_prophet.xml	Tue Mar 11 20:52:08 2014 -0400
+++ b/protein_prophet.xml	Tue Mar 11 20:52:20 2014 -0400
@@ -1,7 +1,7 @@
 <tool id="proteomics_search_protein_prophet_1" name="Protein Prophet" version="1.0.1">
 	<requirements>
-	    <requirement type="package" version="1.2.2">galaxy_protk</requirement>
-	    <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement>
+	    <requirement type="package" version="1.2.6">protk</requirement>
+	    <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
    </requirements>
 
   <description>Calculate Protein Prophet statistics on search results</description>
@@ -9,10 +9,12 @@
 
 <!-- Note .. the input file is assumed to be the first argument -->
   <command interpreter="bash">
-  	protein_prophet_wrapper.sh 
+  	protein_prophet.rb
 
   	--galaxy $input_file 
 
+  	-o protein_prophet_results.prot.xml
+
   	-r
 
   	$iproph