|
1
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="trans_proteomic_pipeline" version="4.6.1">
|
|
|
4 <install version="1.0">
|
|
|
5 <actions>
|
|
|
6 <action type="download_by_url">https://dl.dropboxusercontent.com/u/226794/galaxy/tpp_4.6.1.tar.gz</action>
|
|
|
7 <action language="cheetah" type="template_command">
|
|
|
8 sh install.sh $env.INSTALL_DIR
|
|
|
9 </action>
|
|
|
10 <action type="set_environment">
|
|
|
11 <environment_variable action="set_to" name="TPP_PERL_DIR">$INSTALL_DIR/perl5</environment_variable>
|
|
|
12 <environment_variable action="set_to" name="PROTK_TPP_ROOT">$INSTALL_DIR</environment_variable>
|
|
|
13 </action>
|
|
|
14 </actions>
|
|
|
15 </install>
|
|
|
16 <readme>
|
|
|
17 This part of the installer is extremely minimal. It just downloads and runs a shell script that does the install.
|
|
|
18 The installer will attempt to do the following;
|
|
|
19
|
|
|
20 1. Download and install perl-locallib and cpanminus
|
|
|
21 2. Install perl packages required by the TPP into a self contained perl local lib
|
|
|
22 3. Download the source code of the TPP and compile it.
|
|
|
23
|
|
|
24 Installation has been tested on an Ubuntu Precise 64 box with the following system packages installed
|
|
|
25 curl build-essential mercurial libperl-dev liblocal-lib-perl cpanminus libxml2-dev expat libexpat1-dev libbz2-dev
|
|
|
26
|
|
|
27 </readme>
|
|
|
28 </package>
|
|
|
29 </tool_dependency>
|
