Mercurial > repos > iracooke > package_msgfplus_20140210

comparison tool_dependencies.xml @ 3:c3b14e905da2 draft default tip

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Make MSGFPlus.jar executable to find it with which
author iracooke
date Wed, 05 Mar 2014 21:48:33 -0500
parents 7d614a857e51
children
comparison
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2:7d614a857e51 3:c3b14e905da2
6 <action type="download_by_url">http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.20140210.zip</action> 6 <action type="download_by_url">http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.20140210.zip</action>
7 <action type="move_file"> 7 <action type="move_file">
8 <source>MSGFPlus.jar</source> 8 <source>MSGFPlus.jar</source>
9 <destination>$INSTALL_DIR</destination> 9 <destination>$INSTALL_DIR</destination>
10 </action> 10 </action>
11
12 <!-- This is purely so we can find it using which -->
13 <action type="shell_command">chmod u+x $INSTALL_DIR/MSGFPlus.jar</action>
11 <action type="set_environment"> 14 <action type="set_environment">
12 <environment_variable name="MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable> 15 <environment_variable name="MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
13 <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable> 16 <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
15 </action> 18 </action>