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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="msgfplus" version="20140210">
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4 <install version="1.0">
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5 <actions>
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2
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6 <action type="download_by_url">http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.20140210.zip</action>
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1
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7 <action type="move_file">
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8 <source>MSGFPlus.jar</source>
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9 <destination>$INSTALL_DIR</destination>
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10 </action>
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3
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11
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12 <!-- This is purely so we can find it using which -->
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13 <action type="shell_command">chmod u+x $INSTALL_DIR/MSGFPlus.jar</action>
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14 <action type="set_environment">
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1
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15 <environment_variable name="MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
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16 <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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1
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22 Downloads and installs MSGF+.
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23 https://proteomics.ucsd.edu/
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24 Java 1.6 is required to run MSGF+.
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25 </readme>
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26 </package>
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27 </tool_dependency>
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