Mercurial > repos > imgteam > split_image
annotate split_image.xml @ 0:5deaa390ca62 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
author | imgteam |
---|---|
date | Fri, 07 Mar 2025 08:07:52 +0000 |
parents | |
children | 4b7940d0c051 |
rev | line source |
---|---|
0
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
1 <tool id="ip_split_image" name="Split image along axes" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
2 <description>with NumPy</description> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
3 <macros> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
4 <import>creators.xml</import> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
5 <import>tests.xml</import> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
6 <token name="@TOOL_VERSION@">2.2.3</token> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
7 <token name="@VERSION_SUFFIX@">0</token> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
8 </macros> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
9 <creator> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
10 <expand macro="creators/bmcv"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
11 </creator> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
12 <edam_operations> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
13 <edam_operation>operation_3443</edam_operation> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
14 </edam_operations> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
15 <requirements> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
16 <requirement type="package" version="@TOOL_VERSION@">numpy</requirement> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
17 <requirement type="package" version="0.3.2">giatools</requirement> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
18 <requirement type="package" version="2024.7.24">tifffile</requirement> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
19 </requirements> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
20 <command detect_errors="aggressive"><![CDATA[ |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
21 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
22 mkdir output && |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
23 python '$__tool_directory__/split.py' |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
24 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
25 '$input' |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
26 '$axis' |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
27 output |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
28 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
29 $squeeze |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
30 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
31 ]]></command> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
32 <inputs> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
33 <param name="input" type="data" format="tiff,png" label="Image to split" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
34 <param name="axis" type="select" label="Axis to split along"> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
35 <option value="T">T-axis (split the frames of a temporal image sequence)</option> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
36 <option value="Z">Z-axis (split the slices of a 3-D image or image sequence)</option> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
37 <option value="C" selected="true">C-axis (split the channels of an image or image sequence)</option> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
38 <option value="S">S-axis (split the samples of an image or image sequence)</option> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
39 </param> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
40 <param name="squeeze" type="boolean" checked="false" truevalue="--squeeze" falsevalue="" label="Squeeze result imags" help="Only axes with more than one element will be retained in the result images. Does not apply for X and Y axes." /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
41 </inputs> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
42 <outputs> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
43 <collection type="list" name="output" label="Split ${on_string} along ${axis} axis"> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
44 <discover_datasets directory="output" pattern="__name__" format="tiff" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
45 </collection> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
46 </outputs> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
47 <tests> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
48 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
49 <!-- PNG tests --> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
50 <test> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
51 <param name="input" value="rgb1.png" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
52 <param name="axis" value="C" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
53 <param name="squeeze" value="false" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
54 <output_collection name="output" type="list" count="3"> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
55 <expand macro="tests/intensity_image_diff/element" name="1.tiff" value="rgb1_r.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
56 <expand macro="tests/intensity_image_diff/element" name="2.tiff" value="rgb1_g.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
57 <expand macro="tests/intensity_image_diff/element" name="3.tiff" value="rgb1_b.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
58 </output_collection> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
59 </test> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
60 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
61 <!-- TIFF tests --> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
62 <test> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
63 <param name="input" value="zcyx.tiff" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
64 <param name="axis" value="Z" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
65 <param name="squeeze" value="false" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
66 <output_collection name="output" type="list" count="25"> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
67 <expand macro="tests/intensity_image_diff/element" name="01.tiff" value="zcyx_slice01.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
68 <expand macro="tests/intensity_image_diff/element" name="25.tiff" value="zcyx_slice25.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
69 </output_collection> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
70 </test> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
71 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
72 <!-- Test squeezing --> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
73 <test> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
74 <param name="input" value="rgb1.png" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
75 <param name="axis" value="C" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
76 <param name="squeeze" value="true" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
77 <output_collection name="output" type="list" count="3"> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
78 <expand macro="tests/intensity_image_diff/element" name="1.tiff" value="rgb1_squeezed_r.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
79 <expand macro="tests/intensity_image_diff/element" name="2.tiff" value="rgb1_squeezed_g.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
80 <expand macro="tests/intensity_image_diff/element" name="3.tiff" value="rgb1_squeezed_b.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
81 </output_collection> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
82 </test> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
83 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
84 <!-- Test with missing axes --> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
85 <test> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
86 <param name="input" value="rgb1.png" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
87 <param name="axis" value="Z" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
88 <param name="squeeze" value="false" /> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
89 <output_collection name="output" type="list" count="1"> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
90 <expand macro="tests/intensity_image_diff/element" name="1.tiff" value="rgb1_split_z.tiff" ftype="tiff"/> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
91 </output_collection> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
92 </test> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
93 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
94 </tests> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
95 <help> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
96 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
97 **Splits an image along a specific axis (e.g., channels).** |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
98 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
99 This tool splits an image along a specifc axis and yields a collection of images. |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
100 This can be used, for example, to convert a multi-channel image into a collection of single-channel images. |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
101 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
102 The pixel data type of the split image is preserved (will be the same as the input image). |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
103 |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
104 </help> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
105 <citations> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
106 <citation type="doi">10.1038/s41586-020-2649-2</citation> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
107 </citations> |
5deaa390ca62
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ commit f1052360d410594fa1795cf0e02576b8fa4d4135
imgteam
parents:
diff
changeset
|
108 </tool> |