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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:23:06 -0500
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0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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1 <tool id="ip_projective_transformation" name="Projective Transformation" version="0.0.4">
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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2 <description>Projective Transformation</description>
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3 <requirements>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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4 <requirement type="package" version="0.14.2">scikit-image</requirement>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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5 <requirement type="package" version="0.23.4">pandas</requirement>
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6 <requirement type="package" version="1.15.4">numpy</requirement>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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7 <!--<requirement type="package" version="1.1.0">scipy</requirement>-->
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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8 </requirements>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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9 <command>
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10 <![CDATA[
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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11 python '$__tool_directory__/projective_transformation.py'
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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12 '$fixed_image'
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13 '$moving_image'
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14 '$warp_matrix'
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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15 ./out.png
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16 ]]>
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17 </command>
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18 <inputs>
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19 <param name="moving_image" type="data" format="png" label="Moving Image" />
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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20 <param name="fixed_image" type="data" format="png" label="Fixed Image" />
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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21 <param name="warp_matrix" type= "data" format="tabular" label="Warp Matrix" />
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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22 </inputs>
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23 <outputs>
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24 <data format="png" name="out" from_work_dir="out.png" />
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25 </outputs>
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26 <tests>
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27 <test>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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28 <param name="fixed_image" value="sample1.png"/>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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29 <param name="moving_image" value="sample2.png"/>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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30 <param name="warp_matrix" value="warp_matrix.tsv"/>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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31 <output name="out" value="yam.png" ftype="png" compare="sim_size"/>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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32 </test>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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33 </tests>
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34 <help>
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35 **What it does**
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36
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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37 This tool performs a projective transformation of the input (moving) image so that it fits the fixed image.
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38 </help>
0539c5178b1d planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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39 <citations>
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40 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
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41 </citations>
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42 </tool>