Mercurial > repos > imgteam > 2d_feature_extraction
view validators.xml @ 7:048545339ced draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_feature_extraction/ commit b8e0b656d417db6e2ad0f187fc3c5afff0c3acd7
| author | imgteam |
|---|---|
| date | Tue, 06 Jan 2026 09:25:17 +0000 |
| parents | 5530132d500e |
| children |
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<macros> <!-- Macros for validation of inputs --> <xml name="validators/is_single_channel"> <!-- The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does hence not inherit the metadata fields like `channels`. To cope with that, we allow all datasets except those where we *know* that they are *not* single-channel. --> <validator type="expression" message="Dataset is a multi-channel image" ><![CDATA[getattr(value.metadata, "channels", None) in (None, '') or int(value.metadata.channels) < 2]]></validator> </xml> <xml name="validators/is_single_frame"> <!-- The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does hence not inherit the metadata fields like `frames`. To cope with that, we allow all datasets except those where we *know* that they are *not* single-frame. --> <validator type="expression" message="Dataset is a multi-frame image" ><![CDATA[getattr(value.metadata, "frames", None) in (None, '') or int(value.metadata.frames) < 2]]></validator> </xml> <xml name="validators/is_2d"> <!-- The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does hence not inherit the metadata fields like `depth`. To cope with that, we allow all datasets except those where we *know* that they are *not* 2-D. --> <validator type="expression" message="Dataset is a 3-D image" ><![CDATA[getattr(value.metadata, "depth", None) in (None, '') or int(value.metadata.depth) < 2]]></validator> </xml> <xml name="validators/is_3d"> <!-- The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does hence not inherit the metadata fields like `depth`. To cope with that, we allow all datasets except those where we *know* that they are *not* 3-D. --> <validator type="expression" message="Dataset is a 2-D image" ><![CDATA[getattr(value.metadata, "depth", None) in (None, '') or int(value.metadata.depth) >= 2]]></validator> </xml> <xml name="validators/is_binary"> <!-- The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does hence not inherit the metadata fields like `num_unique_values`. To cope with that, we allow all datasets except those where we *know* that they are *not* binary. --> <validator type="expression" message="Dataset is not a binary image" ><![CDATA[getattr(value.metadata, "num_unique_values", None) in (None, '') or int(value.metadata.num_unique_values) <= 2]]></validator> </xml> </macros>
