view validators.xml @ 5:5530132d500e draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_feature_extraction/ commit bb2d58ed37d8eb09583b86e3cdd9f5d1b56c42a0
author imgteam
date Sun, 04 Jan 2026 20:56:17 +0000
parents
children 048545339ced
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<macros>

    <!-- Macros for validation of inputs -->

    <xml name="validators/is_single_channel">
        <!--
        The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does
        hence not inherit the metadata fields like `channels`. To cope with that, we allow all datasets
        except those where we *know* that they are *not* single-channel.
        -->
        <validator type="expression" message="Dataset is a multi-channel image"
            ><![CDATA[getattr(value.metadata, "channels", None) in (None, '') or int(value.metadata.channels) < 2]]></validator>
    </xml>

    <xml name="validators/is_single_frame">
        <!--
        The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does
        hence not inherit the metadata fields like `frames`. To cope with that, we allow all datasets
        except those where we *know* that they are *not* single-frame.
        -->
        <validator type="expression" message="Dataset is a multi-frame image"
            ><![CDATA[getattr(value.metadata, "frames", None) in (None, '') or int(value.metadata.frames) < 2]]></validator>
    </xml>

    <xml name="validators/is_2d">
        <!--
        The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does
        hence not inherit the metadata fields like `depth`. To cope with that, we allow all datasets
        except those where we *know* that they are *not* 2-D.
        -->
        <validator type="expression" message="Dataset is a 3-D image"
            ><![CDATA[getattr(value.metadata, "depth", None) in (None, '') or int(value.metadata.depth) < 2]]></validator>
    </xml>

    <xml name="validators/is_binary">
        <!--
        The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does
        hence not inherit the metadata fields like `num_unique_values`. To cope with that, we allow all
        datasets except those where we *know* that they are *not* binary.
        -->
        <validator type="expression" message="Dataset is not a binary image"
            ><![CDATA[getattr(value.metadata, "num_unique_values", None) in (None, '') or int(value.metadata.num_unique_values) <= 2]]></validator>
    </xml>

</macros>