Mercurial > repos > imgteam > 2d_feature_extraction
diff validators.xml @ 5:5530132d500e draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_feature_extraction/ commit bb2d58ed37d8eb09583b86e3cdd9f5d1b56c42a0
| author | imgteam |
|---|---|
| date | Sun, 04 Jan 2026 20:56:17 +0000 |
| parents | |
| children | 048545339ced |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/validators.xml Sun Jan 04 20:56:17 2026 +0000 @@ -0,0 +1,45 @@ +<macros> + + <!-- Macros for validation of inputs --> + + <xml name="validators/is_single_channel"> + <!-- + The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does + hence not inherit the metadata fields like `channels`. To cope with that, we allow all datasets + except those where we *know* that they are *not* single-channel. + --> + <validator type="expression" message="Dataset is a multi-channel image" + ><![CDATA[getattr(value.metadata, "channels", None) in (None, '') or int(value.metadata.channels) < 2]]></validator> + </xml> + + <xml name="validators/is_single_frame"> + <!-- + The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does + hence not inherit the metadata fields like `frames`. To cope with that, we allow all datasets + except those where we *know* that they are *not* single-frame. + --> + <validator type="expression" message="Dataset is a multi-frame image" + ><![CDATA[getattr(value.metadata, "frames", None) in (None, '') or int(value.metadata.frames) < 2]]></validator> + </xml> + + <xml name="validators/is_2d"> + <!-- + The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does + hence not inherit the metadata fields like `depth`. To cope with that, we allow all datasets + except those where we *know* that they are *not* 2-D. + --> + <validator type="expression" message="Dataset is a 3-D image" + ><![CDATA[getattr(value.metadata, "depth", None) in (None, '') or int(value.metadata.depth) < 2]]></validator> + </xml> + + <xml name="validators/is_binary"> + <!-- + The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does + hence not inherit the metadata fields like `num_unique_values`. To cope with that, we allow all + datasets except those where we *know* that they are *not* binary. + --> + <validator type="expression" message="Dataset is not a binary image" + ><![CDATA[getattr(value.metadata, "num_unique_values", None) in (None, '') or int(value.metadata.num_unique_values) <= 2]]></validator> + </xml> + +</macros>
