Mercurial > repos > greg > validate_affy_metadata

changeset 15:df9d19f771ae draft

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Uploaded
author greg
date Mon, 19 Nov 2018 13:32:35 -0500
parents 1522cab08b44
children b5bbc8f1f225
files validate_affy_metadata.xml
diffstat 1 files changed, 36 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/validate_affy_metadata.xml	Thu Nov 15 10:26:54 2018 -0500
+++ b/validate_affy_metadata.xml	Mon Nov 19 13:32:35 2018 -0500
@@ -19,13 +19,47 @@
         </test>
     </tests>
     <help>
+
+-----
+
 **What it does**
 
-Validates an Affymetrix metadata file for 96 well plate data.  These files consist of 31 columns and no more than 96 data lines.
+Validates an Affymetrix metadata file for 96 well plate data.  These files consist of 29 columns and no more than 96 data lines.
 The tool will output the input file if it is valid.
+
 -----
 
-**Required options**
+**Columns**
+
+    date_entered_db
+    user_specimen_id
+    field_call
+    bcoral_genet_id
+    bsym_genet_id
+    reef
+    region
+    latitude
+    longitude
+    geographic_origin
+    sample_location
+    latitude_outplant
+    longitude_outplant
+    depth
+    dist_shore
+    disease_resist
+    bleach_resist
+    mortality
+    tle
+    spawning
+    collector_last_name
+    collector_first_name
+    org
+    collection_date
+    contact_email
+    seq_facility
+    array_version
+    public
+    public_after_date
     </help>
     <citations>
     </citations>