Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.xml @ 15:df9d19f771ae draft

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author greg
date Mon, 19 Nov 2018 13:32:35 -0500
parents bdfd9b8d32f1
children b5bbc8f1f225
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14:1522cab08b44 15:df9d19f771ae
17 <param name="input" value="affy_metadata.csv" ftype="csv"/> 17 <param name="input" value="affy_metadata.csv" ftype="csv"/>
18 <output name="output" file="affy_metadata.csv" ftype="csv"/> 18 <output name="output" file="affy_metadata.csv" ftype="csv"/>
19 </test> 19 </test>
20 </tests> 20 </tests>
21 <help> 21 <help>
22
23 -----
24
22 **What it does** 25 **What it does**
23 26
24 Validates an Affymetrix metadata file for 96 well plate data. These files consist of 31 columns and no more than 96 data lines. 27 Validates an Affymetrix metadata file for 96 well plate data. These files consist of 29 columns and no more than 96 data lines.
25 The tool will output the input file if it is valid. 28 The tool will output the input file if it is valid.
29
26 ----- 30 -----
27 31
28 **Required options** 32 **Columns**
33
34 date_entered_db
35 user_specimen_id
36 field_call
37 bcoral_genet_id
38 bsym_genet_id
39 reef
40 region
41 latitude
42 longitude
43 geographic_origin
44 sample_location
45 latitude_outplant
46 longitude_outplant
47 depth
48 dist_shore
49 disease_resist
50 bleach_resist
51 mortality
52 tle
53 spawning
54 collector_last_name
55 collector_first_name
56 org
57 collection_date
58 contact_email
59 seq_facility
60 array_version
61 public
62 public_after_date
29 </help> 63 </help>
30 <citations> 64 <citations>
31 </citations> 65 </citations>
32 </tool> 66 </tool>