Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.py @ 17:17db886fbfad draft

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Uploaded
author greg
date Tue, 04 Dec 2018 13:51:21 -0500
parents 73a0f0ba30d4
children 38166b76f47a
comparison
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16:b5bbc8f1f225 17:17db886fbfad
73 continue 73 continue
74 line = line.rstrip("\r\n") 74 line = line.rstrip("\r\n")
75 if i > 97: 75 if i > 97:
76 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 97 lines (must be 1 header line and no more than 96 data lines).") 76 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 97 lines (must be 1 header line and no more than 96 data lines).")
77 stop_error(accumulated_msgs) 77 stop_error(accumulated_msgs)
78 items = line.split(",") 78 items = line.split("\t")
79 if len(items) != 29: 79 if len(items) != 29:
80 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 29)." % (i, len(items))) 80 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 29)." % (i, len(items)))
81 stop_error(accumulated_msgs) 81 stop_error(accumulated_msgs)
82 # Required and validated. 82 # Required and validated.
83 date_entered_db = items[0] 83 date_entered_db = items[0]