Mercurial > repos > greg > resize_coordinate_window
diff resize_coordinate_window.xml @ 0:d64206d13298 draft default tip
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author | greg |
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date | Wed, 06 Jan 2016 15:15:56 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/resize_coordinate_window.xml Wed Jan 06 15:15:56 2016 -0500 @@ -0,0 +1,39 @@ +<tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.0"> + <description>of GFF data</description> + <requirements> + <requirement type="package" version="5.18.1">perl</requirement> + </requirements> + <command>perl $__tool_directory__/resize_coordinate_window.pl "$input" $window "$output"</command> + <inputs> + <param name="input" type="data" format="gff" label="Gff file" /> + <param name="window" type="integer" value="0" label="Window size in base pairs" /> + </inputs> + <outputs> + <data name="output" format="gff" /> + </outputs> + <tests> + <test> + <param name="input" value="input.gff" ftype="gff" /> + <param name="window" value="1" /> + <output name="output" file="output.gff" ftype="gff" /> + </test> + </tests> + <help> + +**What it does** + +Modifies the start and stop coordinates of GFF data such that the new start and stop position is based on +a specified window size that is centered on the midpoint. + + </help> + <citations> + <citation type="bibtex"> + @unpublished{None, + author = {Lai, William}, + title = {None}, + year = {None}, + eprint = {None}, + url = {http://www.huck.psu.edu/content/research/independent-centers-excellence/center-for-eukaryotic-gene-regulation} + }</citation> + </citations> +</tool>