Mercurial > repos > greg > resize_coordinate_window
comparison resize_coordinate_window.xml @ 0:d64206d13298 draft default tip
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| author | greg |
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| date | Wed, 06 Jan 2016 15:15:56 -0500 |
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| -1:000000000000 | 0:d64206d13298 |
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| 1 <tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.0"> | |
| 2 <description>of GFF data</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="5.18.1">perl</requirement> | |
| 5 </requirements> | |
| 6 <command>perl $__tool_directory__/resize_coordinate_window.pl "$input" $window "$output"</command> | |
| 7 <inputs> | |
| 8 <param name="input" type="data" format="gff" label="Gff file" /> | |
| 9 <param name="window" type="integer" value="0" label="Window size in base pairs" /> | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 <data name="output" format="gff" /> | |
| 13 </outputs> | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="input" value="input.gff" ftype="gff" /> | |
| 17 <param name="window" value="1" /> | |
| 18 <output name="output" file="output.gff" ftype="gff" /> | |
| 19 </test> | |
| 20 </tests> | |
| 21 <help> | |
| 22 | |
| 23 **What it does** | |
| 24 | |
| 25 Modifies the start and stop coordinates of GFF data such that the new start and stop position is based on | |
| 26 a specified window size that is centered on the midpoint. | |
| 27 | |
| 28 </help> | |
| 29 <citations> | |
| 30 <citation type="bibtex"> | |
| 31 @unpublished{None, | |
| 32 author = {Lai, William}, | |
| 33 title = {None}, | |
| 34 year = {None}, | |
| 35 eprint = {None}, | |
| 36 url = {http://www.huck.psu.edu/content/research/independent-centers-excellence/center-for-eukaryotic-gene-regulation} | |
| 37 }</citation> | |
| 38 </citations> | |
| 39 </tool> |