Mercurial > repos > greg > plant_tribes_gene_family_scaffold_loader

changeset 13:6f1f5f242503 draft

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Uploaded
author greg
date Wed, 17 Oct 2018 14:36:16 -0400
parents ef07c8756360
children 4c88c8d793e8
files gene_family_scaffold_loader.py
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_scaffold_loader.py	Wed Oct 17 10:07:38 2018 -0400
+++ b/gene_family_scaffold_loader.py	Wed Oct 17 14:36:16 2018 -0400
@@ -13,10 +13,11 @@
 from sqlalchemy import create_engine, MetaData, Table
 from sqlalchemy.engine.url import make_url
 
-BLACKLIST_STRINGS = ['Unknown protein(s)',
-                     'No TAIR description(s)',
-                     'Representative annotation below 0.1%'
-                     'Representative AHRD below 0.1%']
+BLACKLIST_STRINGS = [['NULL',
+                     'Unknown protein',
+                     'No TAIR description',
+                     'Representative annotation below 0'
+                     'Representative AHRD below 0']
 
 
 class ScaffoldLoader(object):