Mercurial > repos > greg > package_icqsol_1_0

comparison tool_dependencies.xml @ 4:789f4e7df861 draft

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author greg
date Thu, 19 Nov 2015 21:25:50 -0500
parents 245029376e25
children 70c2d4e3a34b
comparison
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3:245029376e25 4:789f4e7df861
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="cmake" version="3.2.3"> 3 <package name="cmake" version="3.2.3">
4 <repository changeset_revision="e932c7599efd" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="icqsol" version="1.0"> 6 <package name="icqsol" version="1.0">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions_group> 8 <actions_group>
9 <actions architecture="x86_64" os="linux"> 9 <actions architecture="x86_64" os="linux">
10 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 --> 10 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
11 <action target_filename="Anaconda-2.3.0-Linux-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-Linux-x86_64.sh</action> 11 <action target_filename="Anaconda-2.3.0-Linux-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-Linux-x86_64.sh</action>
12 12
13 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
14 <repository changeset_revision="e932c7599efd" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
15 <package name="cmake" version="3.2.3" /> 15 <package name="cmake" version="3.2.3" />
16 </repository> 16 </repository>
17 </action> 17 </action>
18 18
19 <action type="shell_command">bash Anaconda-2.3.0-Linux-x86_64.sh -b -f -p $INSTALL_DIR</action> 19 <action type="shell_command">bash Anaconda-2.3.0-Linux-x86_64.sh -b -f -p $INSTALL_DIR</action>
20 20
21 <!-- Install VTK 6.3.0 into the above Python --> 21 <!-- Install VTK 6.3.0 into the above Python -->
22 <action type="shell_command"> 22 <action type="make_directory">$TMP_WORK_DIR/vtk</action>
23 23 <action type="change_directory">$TMP_WORK_DIR/vtk</action>
24 export PATH=$INSTALL_DIR/bin:$PATH &amp;&amp; 24 <action target_filename="VTK-6.2.0.tar.gz" type="download_file">http://www.vtk.org/files/release/6.2/VTK-6.2.0.tar.gz</action>
25 <action type="shell_command">tar xfvz VTK-6.2.0.tar.gz</action>
26 <action type="change_directory">VTK-6.2.0</action>
27 <action type="shell_command">
28
29 export PATH=$INSTALL_DIR/bin:$PATH &amp;&amp;
30 export PYTHONPATH=$INSTALL_DIR:$PYTHONPATH &amp;&amp;
25 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &amp;&amp; 31 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &amp;&amp;
26 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp; 32 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp;
27 conda install -c https://conda.anaconda.org/anaconda vtk --yes 33 cmake \
28 34 -DCMAKE_BUILD_TYPE:STRING=Release \
29 </action> 35 -DCMAKE_INSTALL_PREFIX:PATH=`pwd`/../build \
36 -DVTK_WRAP_PYTHON:BOOL=ON \
37 -DVTK_Group_StandAlone:BOOL=OFF \
38 -DVTK_Group_Rendering:BOOL=OFF \
39 -DModule_vtkCommonColor:BOOL=ON \
40 -DModule_vtkCommonComputationalGeometry:BOOL=ON \
41 -DModule_vtkCommonDataModel:BOOL=ON \
42 -DModule_vtkCommonExecutionModel:BOOL=ON \
43 -DModule_vtkCommonMath:BOOL=ON \
44 -DModule_vtkCommonMisc:BOOL=ON \
45 -DModule_vtkCommonSystem:BOOL=ON \
46 -DModule_vtkCommonTransforms:BOOL=ON \
47 -DModule_vtkFiltersCore:BOOL=ON \
48 -DModule_vtkFiltersExtraction:BOOL=ON \
49 -DModule_vtkFiltersGeneral:BOOL=ON \
50 -DModule_vtkFiltersGeneric:BOOL=ON \
51 -DModule_vtkFiltersGeometry:BOOL=ON \
52 -DModule_vtkFiltersPython:BOOL=ON \
53 -DModule_vtkImagingHybrid:BOOL=ON \
54 -DModule_vtkIOCore:BOOL=ON \
55 -DModule_vtkIOGeometry:BOOL=ON \
56 -DModule_vtkIOLegacy:BOOL=ON \
57 -DModule_vtkWrappingPythonCore:BOOL=ON \
58 -DModule_vtkIOPLY:BOOL=ON \
59 -DVTK_INSTALL_PYTHON_MODULE_DIR:PATH=$INSTALL_DIR/lib/python2.7/site-packages \
60 -DPYTHON_EXECUTABLE:PATH=$INSTALL_DIR/bin/python \
61 -DPYTHON_LIBRARY:PATH=$INSTALL_DIR/lib/libpython2.7.so \
62 -DPYTHON_INCLUDE_DIR:PATH=$INSTALL_DIR/include/python2.7 . &amp;&amp;
63 make -j 8 &amp;&amp;
64 make install
65
66 </action>
67 <action type="move_directory_files">
68 <source_directory>../build/bin</source_directory>
69 <destination_directory>$INSTALL_DIR/bin</destination_directory>
70 </action>
71 <action type="move_directory_files">
72 <source_directory>../build/include</source_directory>
73 <destination_directory>$INSTALL_DIR/include</destination_directory>
74 </action>
75 <action type="move_directory_files">
76 <source_directory>../build/lib</source_directory>
77 <destination_directory>$INSTALL_DIR/lib</destination_directory>
78 </action>
30 79
31 <!-- Install and compile pycsg version 0.3.0 as a package in the above Python --> 80 <!-- Install and compile pycsg version 0.3.0 as a package in the above Python -->
32 <action type="make_directory">$TMP_WORK_DIR/pycsg</action> 81 <action type="make_directory">$TMP_WORK_DIR/pycsg</action>
33 <action type="change_directory">$TMP_WORK_DIR/pycsg</action> 82 <action type="change_directory">$TMP_WORK_DIR/pycsg</action>
34 <action type="shell_command">git clone https://github.com/pletzer/pycsg.git</action> 83 <action type="shell_command">git clone https://github.com/pletzer/pycsg.git</action>
40 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp; 89 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp;
41 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR 90 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
42 91
43 </action> 92 </action>
44 93
45 <!-- Install and compile pytriangle version 1.0 as a package in the above Python -->
46 <action type="make_directory">$TMP_WORK_DIR/pytriangle</action>
47 <action type="change_directory">$TMP_WORK_DIR/pytriangle</action>
48 <action type="shell_command">git clone https://github.com/pletzer/pytriangle.git</action>
49 <action type="change_directory">pytriangle</action>
50 <action type="shell_command">
51
52 export PATH=$INSTALL_DIR/bin:$PATH &amp;&amp;
53 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &amp;&amp;
54 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp;
55 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
56
57 </action>
58
59 <!-- Install and compile icqsol version 1.0 as a package in the above Python --> 94 <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
60 <action type="make_directory">$TMP_WORK_DIR/icqsol</action> 95 <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
61 <action type="change_directory">$TMP_WORK_DIR/icqsol</action> 96 <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
62 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action> 97 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
63 <action type="change_directory">icqsol</action> 98 <action type="change_directory">icqsol</action>
64 <action type="shell_command"> 99 <action type="shell_command">
65 100
66 export PATH=$INSTALL_DIR/bin:$PATH &amp;&amp; 101 export PATH=$INSTALL_DIR/bin:$PATH &amp;&amp;
67 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &amp;&amp; 102 export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &amp;&amp;
68 cmake -DINSTALL_USER=OFF -DINSTALL_PREFIX=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR 103 $INSTALL_DIR/bin/python setup.py develop --prefix=$INSTALL_DIR
104 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
69 105
70 </action> 106 </action>
71 107
72 <action type="set_environment"> 108 <action type="set_environment">
73 <!-- 109 <!--
74 Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets 110 Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
75 the right Python from the environment bin directory. 111 the right Python from the environment bin directory.
76 --> 112 -->
77 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 113 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
78 <environment_variable action="set_to" name="ANACONDAHOME">$INSTALL_DIR</environment_variable> 114 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
79 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable> 115 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
80 </action> 116 </action>
81 </actions> 117 </actions>
82 118
83 <actions architecture="x86_64" os="darwin"> 119 <actions architecture="x86_64" os="darwin">
84 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 --> 120 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
85 <action target_filename="Anaconda-2.3.0-MacOSX-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-MacOSX-x86_64.sh</action> 121 <action target_filename="Anaconda-2.3.0-MacOSX-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-MacOSX-x86_64.sh</action>
86 122
87 <action type="set_environment_for_install"> 123 <action type="set_environment_for_install">
88 <repository changeset_revision="e932c7599efd" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 124 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
89 <package name="cmake" version="3.2.3" /> 125 <package name="cmake" version="3.2.3" />
90 </repository> 126 </repository>
91 </action> 127 </action>
92 128
93 <action type="shell_command">bash Anaconda-2.3.0-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR</action> 129 <action type="shell_command">bash Anaconda-2.3.0-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR</action>
94 130
95 <!-- Install VTK 6.3.0 into the above Python --> 131 <!-- Install and compile VTK 6.2.0 as a package in the above Python -->
96 <action type="shell_command"> 132 <action type="make_directory">$TMP_WORK_DIR/vtk</action>
97 133 <action type="change_directory">$TMP_WORK_DIR/vtk</action>
98 export PATH=$INSTALL_DIR/bin:$PATH &amp;&amp; 134 <action target_filename="VTK-6.2.0.tar.gz" type="download_file">http://www.vtk.org/files/release/6.2/VTK-6.2.0.tar.gz</action>
99 export DYLD_LIBRARY_PATH=$INSTALL_DIR/lib:$DYLD_LIBRARY_PATH &amp;&amp; 135 <action type="shell_command">tar xfvz VTK-6.2.0.tar.gz</action>
100 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp; 136 <action type="change_directory">VTK-6.2.0</action>
101 conda install -c https://conda.anaconda.org/anaconda vtk --yes 137 <action type="shell_command">
102 138
103 </action> 139 export PATH=$INSTALL_DIR/bin:$INSTALL_DIR/bin:$PATH &amp;&amp;
104 <action type="shell_command"> 140 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp;
105 ln -s $INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin/vtkpython $INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin/python 141 cmake \
106 </action> 142 -DCMAKE_BUILD_TYPE:STRING=Release \
143 -DCMAKE_INSTALL_PREFIX:PATH=`pwd`/../build \
144 -DVTK_WRAP_PYTHON:BOOL=ON \
145 -DVTK_Group_StandAlone:BOOL=OFF \
146 -DVTK_Group_Rendering:BOOL=OFF \
147 -DModule_vtkCommonColor:BOOL=ON \
148 -DModule_vtkCommonComputationalGeometry:BOOL=ON \
149 -DModule_vtkCommonDataModel:BOOL=ON \
150 -DModule_vtkCommonExecutionModel:BOOL=ON \
151 -DModule_vtkCommonMath:BOOL=ON \
152 -DModule_vtkCommonMisc:BOOL=ON \
153 -DModule_vtkCommonSystem:BOOL=ON \
154 -DModule_vtkCommonTransforms:BOOL=ON \
155 -DModule_vtkFiltersCore:BOOL=ON \
156 -DModule_vtkFiltersExtraction:BOOL=ON \
157 -DModule_vtkFiltersGeneral:BOOL=ON \
158 -DModule_vtkFiltersGeneric:BOOL=ON \
159 -DModule_vtkFiltersGeometry:BOOL=ON \
160 -DModule_vtkFiltersPython:BOOL=ON \
161 -DModule_vtkImagingHybrid:BOOL=ON \
162 -DModule_vtkIOCore:BOOL=ON \
163 -DModule_vtkIOGeometry:BOOL=ON \
164 -DModule_vtkIOLegacy:BOOL=ON \
165 -DModule_vtkWrappingPythonCore:BOOL=ON \
166 -DModule_vtkIOPLY:BOOL=ON \
167 -DVTK_INSTALL_PYTHON_MODULE_DIR:PATH=$INSTALL_DIR/lib/python2.7/site-packages \
168 -DPYTHON_EXECUTABLE:PATH=$INSTALL_DIR/bin/python \
169 -DPYTHON_LIBRARY:PATH=$INSTALL_DIR/lib/libpython2.7.dylib \
170 -DPYTHON_INCLUDE_DIR:PATH=$INSTALL_DIR/include/python2.7 . &amp;&amp;
171 make -j 8 &amp;&amp;
172 make install
173
174 </action>
175 <action type="move_directory_files">
176 <source_directory>../build/bin</source_directory>
177 <destination_directory>$INSTALL_DIR/bin</destination_directory>
178 </action>
179 <action type="move_directory_files">
180 <source_directory>../build/include</source_directory>
181 <destination_directory>$INSTALL_DIR/include</destination_directory>
182 </action>
183 <action type="move_directory_files">
184 <source_directory>../build/lib</source_directory>
185 <destination_directory>$INSTALL_DIR/lib</destination_directory>
186 </action>
107 187
108 <!-- Install and compile pycsg version 0.3.0 as a package in the above Python --> 188 <!-- Install and compile pycsg version 0.3.0 as a package in the above Python -->
109 <action type="make_directory">$TMP_WORK_DIR/pycsg</action> 189 <action type="make_directory">$TMP_WORK_DIR/pycsg</action>
110 <action type="change_directory">$TMP_WORK_DIR/pycsg</action> 190 <action type="change_directory">$TMP_WORK_DIR/pycsg</action>
111 <action type="shell_command">git clone https://github.com/pletzer/pycsg.git</action> 191 <action type="shell_command">git clone https://github.com/pletzer/pycsg.git</action>
112 <action type="change_directory">pycsg</action> 192 <action type="change_directory">pycsg</action>
113 <action type="shell_command"> 193 <action type="shell_command">
114 194
115 export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &amp;&amp; 195 export PATH=$INSTALL_DIR/bin:$PATH &amp;&amp;
116 export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &amp;&amp; 196 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp;
117 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &amp;&amp;
118 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
119
120 </action>
121
122 <!-- Install and compile pytriangle version 1.0 as a package in the above Python -->
123 <action type="make_directory">$TMP_WORK_DIR/pytriangle</action>
124 <action type="change_directory">$TMP_WORK_DIR/pytriangle</action>
125 <action type="shell_command">git clone https://github.com/pletzer/pytriangle.git</action>
126 <action type="change_directory">pytriangle</action>
127 <action type="shell_command">
128
129 export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &amp;&amp;
130 export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &amp;&amp;
131 export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH
132 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR 197 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
133 198
134 </action> 199 </action>
135 200
136 <!-- Install and compile icqsol version 1.0 as a package in the above Python --> 201 <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
138 <action type="change_directory">$TMP_WORK_DIR/icqsol</action> 203 <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
139 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action> 204 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
140 <action type="change_directory">icqsol</action> 205 <action type="change_directory">icqsol</action>
141 <action type="shell_command"> 206 <action type="shell_command">
142 207
143 export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &amp;&amp; 208 export PATH=$INSTALL_DIR/bin:$PATH &amp;&amp;
144 export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &amp;&amp; 209 $INSTALL_DIR/bin/python setup.py develop --prefix=$INSTALL_DIR &amp;&amp;
145 cmake -DINSTALL_USER=OFF -DINSTALL_PREFIX=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR 210 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
146 211
147 </action> 212 </action>
148 213
149 <action type="set_environment"> 214 <action type="set_environment">
150 <!-- 215 <!--
155 hard links, this is done efficiently. Thus, there's no need to mess with PYTHONPATH because the Python 220 hard links, this is done efficiently. Thus, there's no need to mess with PYTHONPATH because the Python
156 binary in the environment already searches the site-packages in the environment, and the lib of the 221 binary in the environment already searches the site-packages in the environment, and the lib of the
157 environment, and so on. 222 environment, and so on.
158 --> 223 -->
159 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 224 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
160 <environment_variable action="set_to" name="ANACONDAHOME">$INSTALL_DIR</environment_variable> 225 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
161 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable> 226 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
162 </action> 227 </action>
163 </actions> 228 </actions>
164 </actions_group> 229 </actions_group>
165 </install> 230 </install>