Mercurial > repos > greg > multigps
changeset 1:7779952f00dd draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 23 Dec 2015 10:14:53 -0500 |
| parents | 269f8d00045c |
| children | 6b1f68c1e50c |
| files | multigps.xml |
| diffstat | 1 files changed, 9 insertions(+), 11 deletions(-) [+] |
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--- a/multigps.xml Wed Dec 23 10:08:24 2015 -0500 +++ b/multigps.xml Wed Dec 23 10:14:53 2015 -0500 @@ -7,8 +7,6 @@ </requirements> <command> <![CDATA[ - ## when I don't run on my mac... - ## java -Xmx20G -jar $__tool_directory__/multigps_v0.5.jar mkdir multigps_out && java -jar $__tool_directory__/multigps_v0.5.jar --threads="\${GALAXY_SLOTS:-4}" @@ -30,15 +28,15 @@ <configfiles> <configfile name="design_file"> <![CDATA[ - #for input in $input_files: - #set filename = "{$input['input'].filename}" - #set signal_control = $input['signal_control'] - #set format = $input['input'].ext - #set condition_name = $input['condition_name'] - #set replicate_name = $input['replicate_name'] - #set line = '\t'.join($filename, $signal_control, $format, $condition_name, $replicate_name]) - ${line} - #end for + #for input in $input_files: + #set filename = "{$input['input'].filename}" + #set signal_control = $input['signal_control'] + #set format = $input['input'].ext + #set condition_name = $input['condition_name'] + #set replicate_name = $input['replicate_name'] + #set line = '\t'.join($filename, $signal_control, $format, $condition_name, $replicate_name]) + ${line} + #end for ]]> </configfile> <configfile name="get_seq_dir">