# HG changeset patch
# User greg
# Date 1450883693 18000
# Node ID 7779952f00dd9f255129756d169fe8240a2fa611
# Parent  269f8d00045c0ebfe41794675b1bf2936fbd087c
Uploaded

diff -r 269f8d00045c -r 7779952f00dd multigps.xml
--- a/multigps.xml	Wed Dec 23 10:08:24 2015 -0500
+++ b/multigps.xml	Wed Dec 23 10:14:53 2015 -0500
@@ -7,8 +7,6 @@
     </requirements>
     <command>
         <![CDATA[
-            ## when I don't run on my mac...
-            ## java -Xmx20G -jar $__tool_directory__/multigps_v0.5.jar
             mkdir multigps_out &&
             java -jar $__tool_directory__/multigps_v0.5.jar
             --threads="\${GALAXY_SLOTS:-4}"
@@ -30,15 +28,15 @@
     <configfiles>
         <configfile name="design_file">
             <![CDATA[
-            #for input in $input_files:
-                #set filename = "{$input['input'].filename}"
-                #set signal_control = $input['signal_control']
-                #set format = $input['input'].ext
-                #set condition_name = $input['condition_name']
-                #set replicate_name = $input['replicate_name']
-                #set line = '\t'.join($filename, $signal_control, $format, $condition_name, $replicate_name])
-                ${line}
-            #end for
+                #for input in $input_files:
+                    #set filename = "{$input['input'].filename}"
+                    #set signal_control = $input['signal_control']
+                    #set format = $input['input'].ext
+                    #set condition_name = $input['condition_name']
+                    #set replicate_name = $input['replicate_name']
+                    #set line = '\t'.join($filename, $signal_control, $format, $condition_name, $replicate_name])
+                    ${line}
+                #end for
             ]]>
         </configfile>
         <configfile name="get_seq_dir">