Mercurial > repos > greg > multigps
changeset 25:32a59270224b draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 14 Dec 2016 07:54:08 -0500 |
| parents | d5c1ab05259b |
| children | fcc1cc3f3e3c |
| files | multigps.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/multigps.xml Wed Dec 14 07:45:02 2016 -0500 +++ b/multigps.xml Wed Dec 14 07:54:08 2016 -0500 @@ -30,10 +30,6 @@ #set rloc = $aoc.reads_limits_options_cond #set sdc = $aoc.scale_data_cond #set umc = $aoc.use_motif_cond - #set mpc = $umc.multigps_priors_cond - #set bmc = $mpc.both_motifs_cond - #set mfoc = $bmc.nomotifprior_cond - #set rgc = $umc.reference_genome_cond #if str($aoc.advanced_options) == 'display': ############################ ## Limits on how many reads @@ -107,6 +103,8 @@ ## MultiGPS priors ############################ #if str($umc.use_motif) == 'yes': + #set mpc = $umc.multigps_priors_cond + #set rgc = $umc.reference_genome_cond #if str($rgc.reference_genome_source) == "cached": #set seq_dir = os.path.split($rgc.reference_genome.fields.path)[0] #else: @@ -122,6 +120,7 @@ --seq $seq_dir --geninfo ${chromInfo} #if str($mpc.multigps_priors) == 'yes': + #set bmc = $mpc.both_motifs_cond #if str($mpc.noposprior) == 'no': --noposprior #end if @@ -131,6 +130,7 @@ --mememinw $bmc.mememinw --mememaxw $bmc.mememaxw #else: + #set mfoc = $bmc.nomotifprior_cond --nomotifs --nomotifprior $mfoc.nomotifprior #if str($mfoc.nomotifprior) == 'yes':