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comparison test-data/output_process1.txt @ 5:7b15099378a7 draft

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author greg
date Sat, 02 Jan 2016 14:07:37 -0500
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4:32cff4d1d0ff 5:7b15099378a7
1 Using default read distribution.
2 Providing your own read distribution file is highly recommended. Use --d option.
3
4 Processing HitLoaders for: Abf1 1
5 Loading from IDX hit loader: /Users/gvk/work/git_workspace/galaxy/database/files/003/dataset_3093.dat
6 Estimating scaling ratio for Abf1:1
7 Loaded experiments:
8 Condition Abf1: #Replicates: 1
9 Condition Abf1: Rep Abf1:1
10 Signal: 0.0
11 Finding potential binding regions.
12 PotentialRegionFilter: genomic threshold for Abf1:1 with bin width 368 = 1
13 0 potential regions found.
14 Initialzing mixture model
15 Caching sequences
16 Caching completed
17 Alpha Abf1 Range=368 1.0
18 Global noise per base initialization for Abf1 = 0.0000
19 Multi-condition positional priors: A given B:-0.1520 A given notB:-Infinity
20
21 ============================ Round 0 ============================
22 Updated Abf1:1 read distribution from 0 binding events.
23 Alpha Abf1 Range=662 1.0
24 MEME ExitValue: 1
25 Abf1 NOMOTIF
26
27 ============================ Round 1 ============================
28 Updated Abf1:1 read distribution from 0 binding events.
29 Alpha Abf1 Range=762 1.0
30 MEME ExitValue: 1
31 Abf1 NOMOTIF
32
33 ============================ Round 2 ============================
34 Refined Abf1:1 read distribution from 0 binding events.
35 Alpha Abf1 Range=762 1.0
36 MEME ExitValue: 1
37 Abf1 NOMOTIF
38
39 ============================ ML read assignment ============================
40 Abf1:1 0 signal-noise ratio: NaN
41 ML read assignment finished.
42
43 ============================= Post-processing ==============================
44 Binding event detection finished!
45 Binding events are printed to files in /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files beginning with: /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files
46 Events post-analysis
47 Peak-motif distance histograms
48 Peak-peak distance histograms (same condition)
49 Writing results report to: /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files/multiGPS_dataset_3100_files_results.html