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changeset 3:ce656b846c8e draft

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Uploaded
author greg
date Thu, 14 Apr 2016 11:22:23 -0400
parents 97fb2d36c482
children 1f221102ac4d
files fimo_wrapper.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/fimo_wrapper.py	Thu Apr 14 11:18:57 2016 -0400
+++ b/fimo_wrapper.py	Thu Apr 14 11:22:23 2016 -0400
@@ -129,7 +129,7 @@
         stderr = get_stderr(tmp_stderr)
         stop_err(stderr)
     # Sort GFF output by a combination of chrom, score, start.
-    cmd = 'sort -k6,6n -k4,4n -k1,1 -o %s %s' % (gff_file, gff_file)
+    cmd = 'sort -k1,1 -k4,4n -k6,6n -o %s %s' % (gff_file, gff_file)
     proc = subprocess.Popen(args=cmd, stderr=tmp_stderr, shell=True)
     returncode = proc.wait()
     if returncode != 0: