# HG changeset patch
# User greg
# Date 1460647343 14400
# Node ID ce656b846c8ed8ab073e84256f72a34e76f129b9
# Parent  97fb2d36c482c8d3ef4a70c935cdd02383a07975
Uploaded

diff -r 97fb2d36c482 -r ce656b846c8e fimo_wrapper.py
--- a/fimo_wrapper.py	Thu Apr 14 11:18:57 2016 -0400
+++ b/fimo_wrapper.py	Thu Apr 14 11:22:23 2016 -0400
@@ -129,7 +129,7 @@
         stderr = get_stderr(tmp_stderr)
         stop_err(stderr)
     # Sort GFF output by a combination of chrom, score, start.
-    cmd = 'sort -k6,6n -k4,4n -k1,1 -o %s %s' % (gff_file, gff_file)
+    cmd = 'sort -k1,1 -k4,4n -k6,6n -o %s %s' % (gff_file, gff_file)
     proc = subprocess.Popen(args=cmd, stderr=tmp_stderr, shell=True)
     returncode = proc.wait()
     if returncode != 0: