|
6
|
1 <!DOCTYPE HTML>
|
|
|
2 <html>
|
|
|
3 <head>
|
|
|
4 <meta charset="UTF-8">
|
|
|
5 <title>MEME</title>
|
|
|
6 <script>
|
|
|
7 // @JSON_VAR data
|
|
|
8 var data = {
|
|
|
9 "program": "MEME",
|
|
|
10 "version": "4.11.0",
|
|
|
11 "release": "Thu Nov 26 17:48:49 2015 +1000",
|
|
|
12 "stop_reason": "Stopped because requested number of motifs (1) found.",
|
|
|
13 "cmd": [
|
|
|
14 "meme",
|
|
|
15 ],
|
|
|
16 "options": {
|
|
|
17 "mod": "zoops",
|
|
|
18 "revcomp": false,
|
|
|
19 "nmotifs": 1,
|
|
|
20 "minw": 8,
|
|
|
21 "maxw": 50,
|
|
|
22 "minsites": 2,
|
|
|
23 "maxsites": 30,
|
|
|
24 "wnsites": 0.8,
|
|
|
25 "spmap": "uni",
|
|
|
26 "spfuzz": 0.5,
|
|
|
27 "maxwords": -1,
|
|
|
28 "prior": "dirichlet",
|
|
|
29 "b": 0.01,
|
|
|
30 "maxiter": 50,
|
|
|
31 "distance": 0.001,
|
|
|
32 "wg": 11,
|
|
|
33 "ws": 1,
|
|
|
34 "noendgaps": false,
|
|
|
35 "substring": true
|
|
|
36 },
|
|
|
37 "alphabet": {
|
|
|
38 "name": "DNA",
|
|
|
39 "like": "dna",
|
|
|
40 "ncore": 4,
|
|
|
41 "symbols": [
|
|
|
42 {
|
|
|
43 "symbol": "A",
|
|
|
44 "name": "Adenine",
|
|
|
45 "colour": "CC0000",
|
|
|
46 "complement": "T"
|
|
|
47 }, {
|
|
|
48 "symbol": "C",
|
|
|
49 "name": "Cytosine",
|
|
|
50 "colour": "0000CC",
|
|
|
51 "complement": "G"
|
|
|
52 }, {
|
|
|
53 "symbol": "G",
|
|
|
54 "name": "Guanine",
|
|
|
55 "colour": "FFB300",
|
|
|
56 "complement": "C"
|
|
|
57 }, {
|
|
|
58 "symbol": "T",
|
|
|
59 "aliases": "U",
|
|
|
60 "name": "Thymine",
|
|
|
61 "colour": "008000",
|
|
|
62 "complement": "A"
|
|
|
63 }, {
|
|
|
64 "symbol": "N",
|
|
|
65 "aliases": "X.",
|
|
|
66 "name": "Any base",
|
|
|
67 "equals": "ACGT"
|
|
|
68 }, {
|
|
|
69 "symbol": "V",
|
|
|
70 "name": "Not T",
|
|
|
71 "equals": "ACG"
|
|
|
72 }, {
|
|
|
73 "symbol": "H",
|
|
|
74 "name": "Not G",
|
|
|
75 "equals": "ACT"
|
|
|
76 }, {
|
|
|
77 "symbol": "D",
|
|
|
78 "name": "Not C",
|
|
|
79 "equals": "AGT"
|
|
|
80 }, {
|
|
|
81 "symbol": "B",
|
|
|
82 "name": "Not A",
|
|
|
83 "equals": "CGT"
|
|
|
84 }, {
|
|
|
85 "symbol": "M",
|
|
|
86 "name": "Amino",
|
|
|
87 "equals": "AC"
|
|
|
88 }, {
|
|
|
89 "symbol": "R",
|
|
|
90 "name": "Purine",
|
|
|
91 "equals": "AG"
|
