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1 <?xml version='1.0' encoding='UTF-8' standalone='yes'?>
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2 <!-- Document definition -->
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3 <!DOCTYPE MEME[
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4 <!ELEMENT MEME (
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5 training_set,
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6 model,
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7 motifs,
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8 scanned_sites_summary?
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9 )>
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10 <!ATTLIST MEME
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11 version CDATA #REQUIRED
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12 release CDATA #REQUIRED
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13 >
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14 <!-- Training-set elements -->
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15 <!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
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16 <!ATTLIST training_set datafile CDATA #REQUIRED length CDATA #REQUIRED>
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17 <!ELEMENT alphabet (letter*)>
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18 <!ATTLIST alphabet name CDATA #REQUIRED>
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19 <!ELEMENT ambigs (letter*)>
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20 <!ELEMENT letter EMPTY>
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21 <!ATTLIST letter id ID #REQUIRED>
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22 <!ATTLIST letter symbol CDATA #REQUIRED>
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23 <!ATTLIST letter equals CDATA #IMPLIED>
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24 <!ATTLIST letter aliases CDATA #IMPLIED>
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25 <!ATTLIST letter complement CDATA #IMPLIED>
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26 <!ATTLIST letter name CDATA #IMPLIED>
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27 <!ATTLIST letter colour CDATA #IMPLIED>
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28 <!ELEMENT sequence EMPTY>
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29 <!ATTLIST sequence id ID #REQUIRED
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30 name CDATA #REQUIRED
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31 length CDATA #REQUIRED
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32 weight CDATA #REQUIRED
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33 >
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34 <!ELEMENT letter_frequencies (alphabet_array)>
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35
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36 <!-- Model elements -->
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37 <!ELEMENT model (
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38 command_line,
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39 host,
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40 type,
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41 nmotifs,
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42 evalue_threshold,
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43 object_function,
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44 min_width,
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45 max_width,
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46 minic,
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47 wg,
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48 ws,
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49 endgaps,
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50 minsites,
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51 maxsites,
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52 wnsites,
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53 prob,
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54 spmap,
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55 spfuzz,
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56 prior,
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57 beta,
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58 maxiter,
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59 distance,
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60 num_sequences,
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61 num_positions,
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62 seed,
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63 seqfrac,
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64 strands,
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65 priors_file,
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66 reason_for_stopping,
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67 background_frequencies
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68 )>
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69 <!ELEMENT command_line (#PCDATA)*>
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70 <!ELEMENT host (#PCDATA)*>
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71 <!ELEMENT type (#PCDATA)*>
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72 <!ELEMENT nmotifs (#PCDATA)*>
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73 <!ELEMENT evalue_threshold (#PCDATA)*>
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74 <!ELEMENT object_function (#PCDATA)*>
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75 <!ELEMENT min_width (#PCDATA)*>
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76 <!ELEMENT max_width (#PCDATA)*>
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77 <!ELEMENT minic (#PCDATA)*>
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78 <!ELEMENT wg (#PCDATA)*>
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79 <!ELEMENT ws (#PCDATA)*>
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80 <!ELEMENT endgaps (#PCDATA)*>
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81 <!ELEMENT minsites (#PCDATA)*>
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82 <!ELEMENT maxsites (#PCDATA)*>
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83 <!ELEMENT wnsites (#PCDATA)*>
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84 <!ELEMENT prob (#PCDATA)*>
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85 <!ELEMENT spmap (#PCDATA)*>
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86 <!ELEMENT spfuzz (#PCDATA)*>
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87 <!ELEMENT prior (#PCDATA)*>
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88 <!ELEMENT beta (#PCDATA)*>
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89 <!ELEMENT maxiter (#PCDATA)*>
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90 <!ELEMENT distance (#PCDATA)*>
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91 <!ELEMENT num_sequences (#PCDATA)*>
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92 <!ELEMENT num_positions (#PCDATA)*>
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93 <!ELEMENT seed (#PCDATA)*>
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94 <!ELEMENT seqfrac (#PCDATA)*>
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95 <!ELEMENT strands (#PCDATA)*>
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96 <!ELEMENT priors_file (#PCDATA)*>
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97 <!ELEMENT reason_for_stopping (#PCDATA)*>
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98 <!ELEMENT background_frequencies (alphabet_array)>
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99 <!ATTLIST background_frequencies source CDATA #REQUIRED>
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100
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101 <!-- Motif elements -->
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102 <!ELEMENT motifs (motif*)>
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103 <!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
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104 <!ATTLIST motif id ID #REQUIRED
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105 name CDATA #REQUIRED
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106 width CDATA #REQUIRED
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107 sites CDATA #REQUIRED
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108 llr CDATA #REQUIRED
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109 ic CDATA #REQUIRED
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110 re CDATA #REQUIRED
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111 bayes_threshold CDATA #REQUIRED
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112 e_value CDATA #REQUIRED
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113 elapsed_time CDATA #REQUIRED
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114 url CDATA ""
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115 >
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116 <!ELEMENT scores (alphabet_matrix)>
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117 <!ELEMENT probabilities (alphabet_matrix)>
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118 <!ELEMENT regular_expression (#PCDATA)*>
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119
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120 <!-- Contributing site elements -->
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121 <!-- Contributing sites are motif occurences found during the motif discovery phase -->
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122 <!ELEMENT contributing_sites (contributing_site*)>
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123 <!ELEMENT contributing_site (left_flank, site, right_flank)>
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124 <!ATTLIST contributing_site sequence_id IDREF #REQUIRED
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125 position CDATA #REQUIRED
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126 strand (plus|minus|none) 'none'
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127 pvalue CDATA #REQUIRED
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128 >
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129 <!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
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130 <!ELEMENT left_flank (#PCDATA)>
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131 <!-- The site contains the sequence for the motif instance -->
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132 <!ELEMENT site (letter_ref*)>
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133 <!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
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134 <!ELEMENT right_flank (#PCDATA)>
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135
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136 <!-- Scanned site elements -->
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137 <!-- Scanned sites are motif occurences found during the sequence scan phase -->
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138 <!ELEMENT scanned_sites_summary (scanned_sites*)>
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139 <!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
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140 <!ELEMENT scanned_sites (scanned_site*)>
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141 <!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
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142 pvalue CDATA #REQUIRED
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143 num_sites CDATA #REQUIRED>
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144 <!ELEMENT scanned_site EMPTY>
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145 <!ATTLIST scanned_site motif_id IDREF #REQUIRED
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146 strand (plus|minus|none) 'none'
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147 position CDATA #REQUIRED
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148 pvalue CDATA #REQUIRED>
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149
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150 <!-- Utility elements -->
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151 <!-- A reference to a letter in the alphabet -->
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152 <!ELEMENT letter_ref EMPTY>
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153 <!ATTLIST letter_ref letter_id IDREF #REQUIRED>
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154 <!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
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155 <!ELEMENT alphabet_array (value*)>
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156 <!ELEMENT value (#PCDATA)>
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157 <!ATTLIST value letter_id IDREF #REQUIRED>
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158
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159 <!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
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160 <!ELEMENT alphabet_matrix (alphabet_array*)>
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161
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162 ]>
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163 <!-- Begin document body -->
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164 <MEME version="4.11.0" release="Thu Nov 26 17:48:49 2015 +1000">
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165 <training_set datafile="/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat" length="30">
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166 <alphabet name="Protein" like="protein">
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167 <letter id="A" symbol="A" name="Alanine" colour="0000CC"/>
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168 <letter id="C" symbol="C" name="Cysteine" colour="0000CC"/>
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169 <letter id="D" symbol="D" name="Aspartic acid" colour="FF00FF"/>
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170 <letter id="E" symbol="E" name="Glutamic acid" colour="FF00FF"/>
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171 <letter id="F" symbol="F" name="Phenylalanine" colour="0000CC"/>
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172 <letter id="G" symbol="G" name="Glycine" colour="FFB300"/>
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173 <letter id="H" symbol="H" name="Histidine" colour="FFCCCC"/>
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174 <letter id="I" symbol="I" name="Isoleucine" colour="0000CC"/>
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175 <letter id="K" symbol="K" name="Lysine" colour="CC0000"/>
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176 <letter id="L" symbol="L" name="Leucine" colour="0000CC"/>
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177 <letter id="M" symbol="M" name="Methionine" colour="0000CC"/>
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178 <letter id="N" symbol="N" name="Asparagine" colour="008000"/>
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179 <letter id="P" symbol="P" name="Proline" colour="FFFF00"/>
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180 <letter id="Q" symbol="Q" name="Glutamine" colour="008000"/>
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181 <letter id="R" symbol="R" name="Arginine" colour="CC0000"/>
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182 <letter id="S" symbol="S" name="Serine" colour="008000"/>
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183 <letter id="T" symbol="T" name="Threonine" colour="008000"/>
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184 <letter id="V" symbol="V" name="Valine" colour="0000CC"/>
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185 <letter id="W" symbol="W" name="Tryptophan" colour="0000CC"/>
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186 <letter id="Y" symbol="Y" name="Tyrosine" colour="33E6CC"/>
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187 <letter id="X" symbol="X" aliases="*." equals="ACDEFGHIKLMNPQRSTVWY" name="Any amino acid"/>
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188 <letter id="B" symbol="B" equals="DN" name="Asparagine or Aspartic acid"/>
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189 <letter id="Z" symbol="Z" equals="EQ" name="Glutamine or Glutamic acid"/>
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190 <letter id="J" symbol="J" equals="IL" name="Leucine or Isoleucine"/>
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191 </alphabet>
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192 <sequence id="sequence_0" name="chr21_19617074_19617124_+" length="50" weight="1.000000" />
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193 <sequence id="sequence_1" name="chr21_26934381_26934431_+" length="50" weight="1.000000" />
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194 <sequence id="sequence_2" name="chr21_28217753_28217803_-" length="50" weight="1.000000" />
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195 <sequence id="sequence_3" name="chr21_31710037_31710087_-" length="50" weight="1.000000" />
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196 <sequence id="sequence_4" name="chr21_31744582_31744632_-" length="50" weight="1.000000" />
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197 <sequence id="sequence_5" name="chr21_31768316_31768366_+" length="50" weight="1.000000" />
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198 <sequence id="sequence_6" name="chr21_31914206_31914256_-" length="50" weight="1.000000" />
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199 <sequence id="sequence_7" name="chr21_31933633_31933683_-" length="50" weight="1.000000" />
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200 <sequence id="sequence_8" name="chr21_31962741_31962791_-" length="50" weight="1.000000" />
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201 <sequence id="sequence_9" name="chr21_31964683_31964733_+" length="50" weight="1.000000" />
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202 <sequence id="sequence_10" name="chr21_31973364_31973414_+" length="50" weight="1.000000" />
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203 <sequence id="sequence_11" name="chr21_31992870_31992920_+" length="50" weight="1.000000" />
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204 <sequence id="sequence_12" name="chr21_32185595_32185645_-" length="50" weight="1.000000" />
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205 <sequence id="sequence_13" name="chr21_32202076_32202126_-" length="50" weight="1.000000" />
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206 <sequence id="sequence_14" name="chr21_32253899_32253949_-" length="50" weight="1.000000" />
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207 <sequence id="sequence_15" name="chr21_32410820_32410870_-" length="50" weight="1.000000" />
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208 <sequence id="sequence_16" name="chr21_36411748_36411798_-" length="50" weight="1.000000" />
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209 <sequence id="sequence_17" name="chr21_37838750_37838800_-" length="50" weight="1.000000" />
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210 <sequence id="sequence_18" name="chr21_45705687_45705737_+" length="50" weight="1.000000" />
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211 <sequence id="sequence_19" name="chr21_45971413_45971463_-" length="50" weight="1.000000" />
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212 <sequence id="sequence_20" name="chr21_45978668_45978718_-" length="50" weight="1.000000" />
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213 <sequence id="sequence_21" name="chr21_45993530_45993580_+" length="50" weight="1.000000" />
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214 <sequence id="sequence_22" name="chr21_46020421_46020471_+" length="50" weight="1.000000" />
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215 <sequence id="sequence_23" name="chr21_46031920_46031970_+" length="50" weight="1.000000" />
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216 <sequence id="sequence_24" name="chr21_46046964_46047014_+" length="50" weight="1.000000" />
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217 <sequence id="sequence_25" name="chr21_46057197_46057247_+" length="50" weight="1.000000" />
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218 <sequence id="sequence_26" name="chr21_46086869_46086919_-" length="50" weight="1.000000" />
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219 <sequence id="sequence_27" name="chr21_46102103_46102153_-" length="50" weight="1.000000" />
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220 <sequence id="sequence_28" name="chr21_47517957_47518007_+" length="50" weight="1.000000" />
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221 <sequence id="sequence_29" name="chr21_47575506_47575556_-" length="50" weight="1.000000" />
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222 <letter_frequencies>
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223 <alphabet_array>
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224 <value letter_id="A">0.294</value>
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225 <value letter_id="C">0.231</value>
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226 <value letter_id="D">0.000</value>
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227 <value letter_id="E">0.000</value>
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228 <value letter_id="F">0.000</value>
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229 <value letter_id="G">0.257</value>
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230 <value letter_id="H">0.000</value>
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231 <value letter_id="I">0.000</value>
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232 <value letter_id="K">0.000</value>
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233 <value letter_id="L">0.000</value>
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234 <value letter_id="M">0.000</value>
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235 <value letter_id="N">0.000</value>
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236 <value letter_id="P">0.000</value>
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237 <value letter_id="Q">0.000</value>
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238 <value letter_id="R">0.000</value>
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239 <value letter_id="S">0.000</value>
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240 <value letter_id="T">0.217</value>
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241 <value letter_id="V">0.000</value>
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242 <value letter_id="W">0.000</value>
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243 <value letter_id="Y">0.000</value>
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244 </alphabet_array>
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245 </letter_frequencies>
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246 </training_set>
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247 <model>
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248 <command_line>meme /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat -o /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1912/dataset_2530_files -nostatus </command_line>
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249 <host>MacBook-Pro-2.local</host>
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250 <type>zoops</type>
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251 <nmotifs>1</nmotifs>
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252 <evalue_threshold>inf</evalue_threshold>
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253 <object_function>E-value of product of p-values</object_function>
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254 <use_llr>0</use_llr>
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255 <min_width>8</min_width>
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256 <max_width>50</max_width>
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257 <wg>11</wg>
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258 <ws>1</ws>
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259 <endgaps>yes</endgaps>
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260 <substring>yes</substring>
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261 <minsites>2</minsites>
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262 <maxsites>30</maxsites>
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263 <wnsites>0.8</wnsites>
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264 <spmap>pam</spmap>
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265 <spfuzz>120</spfuzz>
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266 <prior>megap</prior>
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267 <beta>7500</beta>
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268 <maxiter>50</maxiter>
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269 <distance>1e-05</distance>
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270 <num_sequences>30</num_sequences>
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271 <num_positions>1500</num_positions>
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272 <seed>0</seed>
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273 <ctfrac>-1</ctfrac>
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274 <maxwords>-1</maxwords>
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275 <strands>none</strands>
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276 <priors_file>prior30.plib</priors_file>
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277 <reason_for_stopping>Stopped because requested number of motifs (1) found.</reason_for_stopping>
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278 <background_frequencies source="dataset with add-one prior applied">
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279 <alphabet_array>
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280 <value letter_id="A">0.291</value>
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281 <value letter_id="C">0.229</value>
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282 <value letter_id="D">0.001</value>
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283 <value letter_id="E">0.001</value>
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284 <value letter_id="F">0.001</value>
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285 <value letter_id="G">0.255</value>
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286 <value letter_id="H">0.001</value>
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287 <value letter_id="I">0.001</value>
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288 <value letter_id="K">0.001</value>
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289 <value letter_id="L">0.001</value>
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290 <value letter_id="M">0.001</value>
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291 <value letter_id="N">0.001</value>
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292 <value letter_id="P">0.001</value>
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293 <value letter_id="Q">0.001</value>
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294 <value letter_id="R">0.001</value>
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295 <value letter_id="S">0.001</value>
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296 <value letter_id="T">0.215</value>
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297 <value letter_id="V">0.001</value>
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298 <value letter_id="W">0.001</value>
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299 <value letter_id="Y">0.001</value>
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300 </alphabet_array>
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301 </background_frequencies>
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302 </model>
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303 <motifs>
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304 <motif id="motif_1" name="1" width="11" sites="25" ic="40.0" re="13.8" llr="239" e_value="2.4e-011" bayes_threshold="5.33554" elapsed_time="0.533107">
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305 <scores>
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306 <alphabet_matrix>
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307 <alphabet_array>
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308 <value letter_id="A">-32</value>
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309 <value letter_id="C">-680</value>
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310 <value letter_id="D">91</value>
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311 <value letter_id="E">77</value>
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312 <value letter_id="F">7</value>
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313 <value letter_id="G">138</value>
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314 <value letter_id="H">-20</value>
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315 <value letter_id="I">55</value>
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316 <value letter_id="K">64</value>
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317 <value letter_id="L">107</value>
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318 <value letter_id="M">11</value>
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319 <value letter_id="N">150</value>
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320 <value letter_id="P">142</value>
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321 <value letter_id="Q">72</value>
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322 <value letter_id="R">87</value>
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323 <value letter_id="S">396</value>
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|
|
324 <value letter_id="T">-148</value>
|
|
|
325 <value letter_id="V">221</value>
|
|
|
326 <value letter_id="W">-140</value>
|
|
|
327 <value letter_id="Y">-36</value>
|
|
|
328 </alphabet_array>
|
|
|
329 <alphabet_array>
|
|
|
330 <value letter_id="A">-11</value>
|
|
|
331 <value letter_id="C">-680</value>
|
|
|
332 <value letter_id="D">89</value>
|
|
|
333 <value letter_id="E">76</value>
|
|
|
334 <value letter_id="F">7</value>
|
|
|
335 <value letter_id="G">137</value>
|
|
|
336 <value letter_id="H">-21</value>
|
|
|
337 <value letter_id="I">55</value>
|
|
|
338 <value letter_id="K">63</value>
|
|
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339 <value letter_id="L">107</value>
|
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340 <value letter_id="M">10</value>
|
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|
341 <value letter_id="N">149</value>
|
|
|
342 <value letter_id="P">141</value>
|
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343 <value letter_id="Q">71</value>
|
|
|
344 <value letter_id="R">87</value>
|
|
|
345 <value letter_id="S">396</value>
|
|
|
346 <value letter_id="T">-239</value>
|
|
|
347 <value letter_id="V">220</value>
|
|
|
348 <value letter_id="W">-140</value>
|
|
|
349 <value letter_id="Y">-36</value>
|
|
|
350 </alphabet_array>
|
|
|
351 <alphabet_array>
|
|
|
352 <value letter_id="A">-79</value>
|
|
|
353 <value letter_id="C">41</value>
|
|
|
354 <value letter_id="D">4</value>
|
|
|
355 <value letter_id="E">21</value>
|
|
|
356 <value letter_id="F">-7</value>
|
|
|
357 <value letter_id="G">44</value>
|
|
|
358 <value letter_id="H">-62</value>
|
|
|
359 <value letter_id="I">42</value>
|
|
|
360 <value letter_id="K">-5</value>
|
|
|
361 <value letter_id="L">99</value>
|
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362 <value letter_id="M">0</value>
|
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|
363 <value letter_id="N">99</value>
|
|
|
364 <value letter_id="P">138</value>
|
|
|
365 <value letter_id="Q">52</value>
|
|
|
366 <value letter_id="R">42</value>
|
|
|
367 <value letter_id="S">399</value>
|
|
|
368 <value letter_id="T">-46</value>
|
|
|
369 <value letter_id="V">223</value>
|
|
|
370 <value letter_id="W">-173</value>
|
|
|
371 <value letter_id="Y">-68</value>
|
|
|
372 </alphabet_array>
|
|
|
373 <alphabet_array>
|
|
|
374 <value letter_id="A">11</value>
|
|
|
375 <value letter_id="C">-677</value>
|
|
|
376 <value letter_id="D">48</value>
|
|
|
377 <value letter_id="E">47</value>
|
|
|
378 <value letter_id="F">-2</value>
|
|
|
379 <value letter_id="G">127</value>
|
|
|
380 <value letter_id="H">-43</value>
|
|
|
381 <value letter_id="I">46</value>
|
|
|
382 <value letter_id="K">27</value>
|
|
|
383 <value letter_id="L">101</value>
|
|
|
384 <value letter_id="M">3</value>
|
|
|
385 <value letter_id="N">124</value>
|
|
|
386 <value letter_id="P">138</value>
|
|
|
387 <value letter_id="Q">60</value>
|
|
|
388 <value letter_id="R">62</value>
|
|
|
389 <value letter_id="S">397</value>
|
|
|
390 <value letter_id="T">-235</value>
|
|
|
391 <value letter_id="V">220</value>
|
|
|
392 <value letter_id="W">-160</value>
|
|
|
393 <value letter_id="Y">-55</value>
|
|
|
394 </alphabet_array>
|
|
|
395 <alphabet_array>
|
|
|
396 <value letter_id="A">-596</value>
|
|
|
397 <value letter_id="C">-820</value>
|
|
|
398 <value letter_id="D">12</value>
|
|
|
399 <value letter_id="E">-21</value>
|
|
|
400 <value letter_id="F">-53</value>
|
|
|
401 <value letter_id="G">-267</value>
|
|
|
402 <value letter_id="H">-74</value>
|
|
|
403 <value letter_id="I">37</value>
|
|
|
404 <value letter_id="K">16</value>
|
|
|
405 <value letter_id="L">44</value>
|
|
|
406 <value letter_id="M">-37</value>
|
|
|
407 <value letter_id="N">98</value>
|
|
|
408 <value letter_id="P">31</value>
|
|
|
409 <value letter_id="Q">9</value>
|
|
|
410 <value letter_id="R">19</value>
|
|
|
411 <value letter_id="S">319</value>
|
|
|
412 <value letter_id="T">212</value>
|
|
|
413 <value letter_id="V">127</value>
|
|
|
414 <value letter_id="W">-193</value>
|
|
|
415 <value letter_id="Y">-95</value>
|
|
|
416 </alphabet_array>
|
|
|
417 <alphabet_array>
|
|
|
418 <value letter_id="A">165</value>
|
|
|
419 <value letter_id="C">-261</value>
|
|
|
420 <value letter_id="D">70</value>
|
|
|
421 <value letter_id="E">110</value>
|
|
|
422 <value letter_id="F">77</value>
|
|
|
423 <value letter_id="G">-521</value>
|
|
|
424 <value letter_id="H">-4</value>
|
|
|
425 <value letter_id="I">147</value>
|
|
|
426 <value letter_id="K">95</value>
|
|
|
427 <value letter_id="L">201</value>
|
|
|
428 <value letter_id="M">90</value>
|
|
|
429 <value letter_id="N">121</value>
|
|
|
430 <value letter_id="P">124</value>
|
|
|
431 <value letter_id="Q">91</value>
|
|
|
432 <value letter_id="R">107</value>
|
|
|
433 <value letter_id="S">425</value>
|
|
|
434 <value letter_id="T">-527</value>
|
|
|
435 <value letter_id="V">314</value>
|
|
|
436 <value letter_id="W">-95</value>
|
|
|
437 <value letter_id="Y">8</value>
|
|
|
438 </alphabet_array>
|
|
|
439 <alphabet_array>
|
|
|
440 <value letter_id="A">-838</value>
|
|
|
441 <value letter_id="C">-990</value>
|
|
|
442 <value letter_id="D">-89</value>
|
|
|
443 <value letter_id="E">-149</value>
|
|
|
444 <value letter_id="F">-151</value>
|
|
|
445 <value letter_id="G">-841</value>
|
|
|
446 <value letter_id="H">-161</value>
|
|
|
447 <value letter_id="I">-117</value>
|
|
|
448 <value letter_id="K">-113</value>
|
|
|
449 <value letter_id="L">-66</value>
|
|
|
450 <value letter_id="M">-209</value>
|
|
|
451 <value letter_id="N">-68</value>
|
|
|
452 <value letter_id="P">-69</value>
|
|
|
453 <value letter_id="Q">-129</value>
|
|
|
454 <value letter_id="R">-91</value>
|
|
|
455 <value letter_id="S">111</value>
|
|
|
456 <value letter_id="T">221</value>
|
|
|
457 <value letter_id="V">-55</value>
|
|
|
458 <value letter_id="W">-255</value>
|
|
|
459 <value letter_id="Y">-173</value>
|
|
|
460 </alphabet_array>
|
|
|
461 <alphabet_array>
|
|
|
462 <value letter_id="A">176</value>
|
|
|
463 <value letter_id="C">-858</value>
|
|
|
464 <value letter_id="D">-79</value>
|
|
|
465 <value letter_id="E">-103</value>
|
|
|
466 <value letter_id="F">-115</value>
|
|
|
467 <value letter_id="G">-717</value>
|
|
|
468 <value letter_id="H">-148</value>
|
|
|
469 <value letter_id="I">-95</value>
|
|
|
470 <value letter_id="K">-108</value>
|
|
|
471 <value letter_id="L">-17</value>
|
|
|
472 <value letter_id="M">-162</value>
|
|
|
473 <value letter_id="N">-61</value>
|
|
|
474 <value letter_id="P">-12</value>
|
|
|
475 <value letter_id="Q">-95</value>
|
|
|
476 <value letter_id="R">-69</value>
|
|
|
477 <value letter_id="S">193</value>
|
|
|
478 <value letter_id="T">-737</value>
|
|
|
479 <value letter_id="V">52</value>
|
|
|
480 <value letter_id="W">-240</value>
|
|
|
481 <value letter_id="Y">-153</value>
|
|
|
482 </alphabet_array>
|
|
|
483 <alphabet_array>
|
|
|
484 <value letter_id="A">134</value>
|
|
|
485 <value letter_id="C">-686</value>
|
|
|
486 <value letter_id="D">0</value>
|
|
|
487 <value letter_id="E">16</value>
|
|
|
488 <value letter_id="F">-12</value>
|
|
|
489 <value letter_id="G">-553</value>
|
|
|
490 <value letter_id="H">-68</value>
|
|
|
491 <value letter_id="I">44</value>
|
|
|
492 <value letter_id="K">-8</value>
|
|
|
493 <value letter_id="L">96</value>
|
|
|
494 <value letter_id="M">-9</value>
|
|
|
495 <value letter_id="N">88</value>
|
|
|
496 <value letter_id="P">124</value>
|
|
|
497 <value letter_id="Q">41</value>
|
|
|
498 <value letter_id="R">36</value>
|
|
|
499 <value letter_id="S">384</value>
|
|
|
500 <value letter_id="T">11</value>
|
|
|
501 <value letter_id="V">216</value>
|
|
|
502 <value letter_id="W">-177</value>
|
|
|
503 <value letter_id="Y">-71</value>
|
|
|
504 </alphabet_array>
|
|
|
505 <alphabet_array>
|
|
|
506 <value letter_id="A">165</value>
|
|
|
507 <value letter_id="C">-261</value>
|
|
|
508 <value letter_id="D">70</value>
|
|
|
509 <value letter_id="E">110</value>
|
|
|
510 <value letter_id="F">77</value>
|
|
|
511 <value letter_id="G">-521</value>
|
|
|
512 <value letter_id="H">-4</value>
|
|
|
513 <value letter_id="I">147</value>
|
|
|
514 <value letter_id="K">95</value>
|
|
|
515 <value letter_id="L">201</value>
|
|
|
516 <value letter_id="M">90</value>
|
|
|
517 <value letter_id="N">121</value>
|
|
|
518 <value letter_id="P">124</value>
|
|
|
519 <value letter_id="Q">91</value>
|
|
|
520 <value letter_id="R">107</value>
|
|
|
521 <value letter_id="S">425</value>
|
|
|
522 <value letter_id="T">-527</value>
|
|
|
523 <value letter_id="V">314</value>
|
|
|
524 <value letter_id="W">-95</value>
|
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|
525 <value letter_id="Y">8</value>
|
|
|
526 </alphabet_array>
|
|
|
527 <alphabet_array>
|
|
|
528 <value letter_id="A">147</value>
|
|
|
529 <value letter_id="C">-614</value>
|
|
|
530 <value letter_id="D">89</value>
|
|
|
531 <value letter_id="E">129</value>
|
|
|
532 <value letter_id="F">93</value>
|
|
|
533 <value letter_id="G">-121</value>
|
|
|
534 <value letter_id="H">12</value>
|
|
|
535 <value letter_id="I">160</value>
|
|
|
536 <value letter_id="K">113</value>
|
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|
537 <value letter_id="L">217</value>
|
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538 <value letter_id="M">108</value>
|
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539 <value letter_id="N">144</value>
|
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540 <value letter_id="P">144</value>
|
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|
541 <value letter_id="Q">111</value>
|
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|
542 <value letter_id="R">125</value>
|
|
|
543 <value letter_id="S">447</value>
|
|
|
544 <value letter_id="T">-241</value>
|
|
|
545 <value letter_id="V">332</value>
|
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|
546 <value letter_id="W">-81</value>
|
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|
547 <value letter_id="Y">22</value>
|
|
|
548 </alphabet_array>
|
|
|
549 </alphabet_matrix>
|
|
|
550 </scores>
|
|
|
551 <probabilities>
|
|
|
552 <alphabet_matrix>
|
|
|
553 <alphabet_array>
|
|
|
554 <value letter_id="A">0.240000</value>
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555 <value letter_id="C">0.000000</value>
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556 <value letter_id="D">0.000000</value>
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557 <value letter_id="E">0.000000</value>
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558 <value letter_id="F">0.000000</value>
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559 <value letter_id="G">0.680000</value>
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560 <value letter_id="H">0.000000</value>
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561 <value letter_id="I">0.000000</value>
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562 <value letter_id="K">0.000000</value>
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563 <value letter_id="L">0.000000</value>
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564 <value letter_id="M">0.000000</value>
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565 <value letter_id="N">0.000000</value>
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566 <value letter_id="P">0.000000</value>
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567 <value letter_id="Q">0.000000</value>
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568 <value letter_id="R">0.000000</value>
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569 <value letter_id="S">0.000000</value>
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570 <value letter_id="T">0.080000</value>
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571 <value letter_id="V">0.000000</value>
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572 <value letter_id="W">0.000000</value>
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573 <value letter_id="Y">0.000000</value>
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574 </alphabet_array>
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575 <alphabet_array>
|
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576 <value letter_id="A">0.280000</value>
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577 <value letter_id="C">0.000000</value>
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578 <value letter_id="D">0.000000</value>
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579 <value letter_id="E">0.000000</value>
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580 <value letter_id="F">0.000000</value>
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581 <value letter_id="G">0.680000</value>
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582 <value letter_id="H">0.000000</value>
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583 <value letter_id="I">0.000000</value>
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584 <value letter_id="K">0.000000</value>
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585 <value letter_id="L">0.000000</value>
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586 <value letter_id="M">0.000000</value>
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587 <value letter_id="N">0.000000</value>
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588 <value letter_id="P">0.000000</value>
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589 <value letter_id="Q">0.000000</value>
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590 <value letter_id="R">0.000000</value>
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591 <value letter_id="S">0.000000</value>
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592 <value letter_id="T">0.040000</value>
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593 <value letter_id="V">0.000000</value>
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594 <value letter_id="W">0.000000</value>
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595 <value letter_id="Y">0.000000</value>
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596 </alphabet_array>
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|
597 <alphabet_array>
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|
598 <value letter_id="A">0.160000</value>
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599 <value letter_id="C">0.320000</value>
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600 <value letter_id="D">0.000000</value>
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601 <value letter_id="E">0.000000</value>
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602 <value letter_id="F">0.000000</value>
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603 <value letter_id="G">0.360000</value>
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604 <value letter_id="H">0.000000</value>
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605 <value letter_id="I">0.000000</value>
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606 <value letter_id="K">0.000000</value>
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607 <value letter_id="L">0.000000</value>
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608 <value letter_id="M">0.000000</value>
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609 <value letter_id="N">0.000000</value>
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610 <value letter_id="P">0.000000</value>
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611 <value letter_id="Q">0.000000</value>
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612 <value letter_id="R">0.000000</value>
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613 <value letter_id="S">0.000000</value>
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614 <value letter_id="T">0.160000</value>
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615 <value letter_id="V">0.000000</value>
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616 <value letter_id="W">0.000000</value>
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617 <value letter_id="Y">0.000000</value>
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618 </alphabet_array>
|
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619 <alphabet_array>
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|
620 <value letter_id="A">0.320000</value>
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621 <value letter_id="C">0.000000</value>
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622 <value letter_id="D">0.000000</value>
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623 <value letter_id="E">0.000000</value>
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624 <value letter_id="F">0.000000</value>
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625 <value letter_id="G">0.640000</value>
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626 <value letter_id="H">0.000000</value>
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627 <value letter_id="I">0.000000</value>
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628 <value letter_id="K">0.000000</value>
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629 <value letter_id="L">0.000000</value>
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630 <value letter_id="M">0.000000</value>
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631 <value letter_id="N">0.000000</value>
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632 <value letter_id="P">0.000000</value>
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633 <value letter_id="Q">0.000000</value>
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634 <value letter_id="R">0.000000</value>
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635 <value letter_id="S">0.000000</value>
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636 <value letter_id="T">0.040000</value>
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637 <value letter_id="V">0.000000</value>
|
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638 <value letter_id="W">0.000000</value>
|
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639 <value letter_id="Y">0.000000</value>
|
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640 </alphabet_array>
|
|
|
641 <alphabet_array>
|
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642 <value letter_id="A">0.000000</value>
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643 <value letter_id="C">0.000000</value>
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644 <value letter_id="D">0.000000</value>
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645 <value letter_id="E">0.000000</value>
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646 <value letter_id="F">0.000000</value>
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647 <value letter_id="G">0.040000</value>
|
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648 <value letter_id="H">0.000000</value>
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649 <value letter_id="I">0.000000</value>
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650 <value letter_id="K">0.000000</value>
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651 <value letter_id="L">0.000000</value>
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652 <value letter_id="M">0.000000</value>
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653 <value letter_id="N">0.000000</value>
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654 <value letter_id="P">0.000000</value>
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655 <value letter_id="Q">0.000000</value>
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656 <value letter_id="R">0.000000</value>
|
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|
657 <value letter_id="S">0.000000</value>
|
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|
658 <value letter_id="T">0.960000</value>
|
|
|
659 <value letter_id="V">0.000000</value>
|
|
|
660 <value letter_id="W">0.000000</value>
|
|
|
661 <value letter_id="Y">0.000000</value>
|
|
|
662 </alphabet_array>
|
|
|
663 <alphabet_array>
|
|
|
664 <value letter_id="A">0.960000</value>
|
|
|
665 <value letter_id="C">0.040000</value>
|
|
|
666 <value letter_id="D">0.000000</value>
|
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|
667 <value letter_id="E">0.000000</value>
|
|
|
668 <value letter_id="F">0.000000</value>
|
|
|
669 <value letter_id="G">0.000000</value>
|
|
|
670 <value letter_id="H">0.000000</value>
|
|
|
671 <value letter_id="I">0.000000</value>
|
|
|
672 <value letter_id="K">0.000000</value>
|
|
|
673 <value letter_id="L">0.000000</value>
|
|
|
674 <value letter_id="M">0.000000</value>
|
|
|
675 <value letter_id="N">0.000000</value>
|
|
|
676 <value letter_id="P">0.000000</value>
|
|
|
677 <value letter_id="Q">0.000000</value>
|
|
|
678 <value letter_id="R">0.000000</value>
|
|
|
679 <value letter_id="S">0.000000</value>
|
|
|
680 <value letter_id="T">0.000000</value>
|
|
|
681 <value letter_id="V">0.000000</value>
|
|
|
682 <value letter_id="W">0.000000</value>
|
|
|
683 <value letter_id="Y">0.000000</value>
|
|
|
684 </alphabet_array>
|
|
|
685 <alphabet_array>
|
|
|
686 <value letter_id="A">0.000000</value>
|
|
|
687 <value letter_id="C">0.000000</value>
|
|
|
688 <value letter_id="D">0.000000</value>
|
|
|
689 <value letter_id="E">0.000000</value>
|
|
|
690 <value letter_id="F">0.000000</value>
|
|
|
691 <value letter_id="G">0.000000</value>
|
|
|
692 <value letter_id="H">0.000000</value>
|
|
|
693 <value letter_id="I">0.000000</value>
|
|
|
694 <value letter_id="K">0.000000</value>
|
|
|
695 <value letter_id="L">0.000000</value>
|
|
|
696 <value letter_id="M">0.000000</value>
|
|
|
697 <value letter_id="N">0.000000</value>
|
|
|
698 <value letter_id="P">0.000000</value>
|
|
|
699 <value letter_id="Q">0.000000</value>
|
|
|
700 <value letter_id="R">0.000000</value>
|
|
|
701 <value letter_id="S">0.000000</value>
|
|
|
702 <value letter_id="T">1.000000</value>
|
|
|
703 <value letter_id="V">0.000000</value>
|
|
|
704 <value letter_id="W">0.000000</value>
|
|
|
705 <value letter_id="Y">0.000000</value>
|
|
|
706 </alphabet_array>
|
|
|
707 <alphabet_array>
|
|
|
708 <value letter_id="A">1.000000</value>
|
|
|
709 <value letter_id="C">0.000000</value>
|
|
|
710 <value letter_id="D">0.000000</value>
|
|
|
711 <value letter_id="E">0.000000</value>
|
|
|
712 <value letter_id="F">0.000000</value>
|
|
|
713 <value letter_id="G">0.000000</value>
|
|
|
714 <value letter_id="H">0.000000</value>
|
|
|
715 <value letter_id="I">0.000000</value>
|
|
|
716 <value letter_id="K">0.000000</value>
|
|
|
717 <value letter_id="L">0.000000</value>
|
|
|
718 <value letter_id="M">0.000000</value>
|
|
|
719 <value letter_id="N">0.000000</value>
|
|
|
720 <value letter_id="P">0.000000</value>
|
|
|
721 <value letter_id="Q">0.000000</value>
|
|
|
722 <value letter_id="R">0.000000</value>
|
|
|
723 <value letter_id="S">0.000000</value>
|
|
|
724 <value letter_id="T">0.000000</value>
|
|
|
725 <value letter_id="V">0.000000</value>
|
|
|
726 <value letter_id="W">0.000000</value>
|
|
|
727 <value letter_id="Y">0.000000</value>
|
|
|
728 </alphabet_array>
|
|
|
729 <alphabet_array>
|
|
|
730 <value letter_id="A">0.760000</value>
|
|
|
731 <value letter_id="C">0.000000</value>
|
|
|
732 <value letter_id="D">0.000000</value>
|
|
|
733 <value letter_id="E">0.000000</value>
|
|
|
734 <value letter_id="F">0.000000</value>
|
|
|
735 <value letter_id="G">0.000000</value>
|
|
|
736 <value letter_id="H">0.000000</value>
|
|
|
737 <value letter_id="I">0.000000</value>
|
|
|
738 <value letter_id="K">0.000000</value>
|
|
|
739 <value letter_id="L">0.000000</value>
|
|
|
740 <value letter_id="M">0.000000</value>
|
|
|
741 <value letter_id="N">0.000000</value>
|
|
|
742 <value letter_id="P">0.000000</value>
|
|
|
743 <value letter_id="Q">0.000000</value>
|
|
|
744 <value letter_id="R">0.000000</value>
|
|
|
745 <value letter_id="S">0.000000</value>
|
|
|
746 <value letter_id="T">0.240000</value>
|
|
|
747 <value letter_id="V">0.000000</value>
|
|
|
748 <value letter_id="W">0.000000</value>
|
|
|
749 <value letter_id="Y">0.000000</value>
|
|
|
750 </alphabet_array>
|
|
|
751 <alphabet_array>
|
|
|
752 <value letter_id="A">0.960000</value>
|
|
|
753 <value letter_id="C">0.040000</value>
|
|
|
754 <value letter_id="D">0.000000</value>
|
|
|
755 <value letter_id="E">0.000000</value>
|
|
|
756 <value letter_id="F">0.000000</value>
|
|
|
757 <value letter_id="G">0.000000</value>
|
|
|
758 <value letter_id="H">0.000000</value>
|
|
|
759 <value letter_id="I">0.000000</value>
|
|
|
760 <value letter_id="K">0.000000</value>
|
|
|
761 <value letter_id="L">0.000000</value>
|
|
|
762 <value letter_id="M">0.000000</value>
|
|
|
763 <value letter_id="N">0.000000</value>
|
|
|
764 <value letter_id="P">0.000000</value>
|
|
|
765 <value letter_id="Q">0.000000</value>
|
|
|
766 <value letter_id="R">0.000000</value>
|
|
|
767 <value letter_id="S">0.000000</value>
|
|
|
768 <value letter_id="T">0.000000</value>
|
|
|
769 <value letter_id="V">0.000000</value>
|
|
|
770 <value letter_id="W">0.000000</value>
|
|
|
771 <value letter_id="Y">0.000000</value>
|
|
|
772 </alphabet_array>
|
|
|
773 <alphabet_array>
|
|
|
774 <value letter_id="A">0.840000</value>
|
|
|
775 <value letter_id="C">0.000000</value>
|
|
|
776 <value letter_id="D">0.000000</value>
|
|
|
777 <value letter_id="E">0.000000</value>
|
|
|
778 <value letter_id="F">0.000000</value>
|
|
|
779 <value letter_id="G">0.120000</value>
|
|
|
780 <value letter_id="H">0.000000</value>
|
|
|
781 <value letter_id="I">0.000000</value>
|
|
|
782 <value letter_id="K">0.000000</value>
|
|
|
783 <value letter_id="L">0.000000</value>
|
|
|
784 <value letter_id="M">0.000000</value>
|
|
|
785 <value letter_id="N">0.000000</value>
|
|
|
786 <value letter_id="P">0.000000</value>
|
|
|
787 <value letter_id="Q">0.000000</value>
|
|
|
788 <value letter_id="R">0.000000</value>
|
|
|
789 <value letter_id="S">0.000000</value>
|
|
|
790 <value letter_id="T">0.040000</value>
|
|
|
791 <value letter_id="V">0.000000</value>
|
|
|
792 <value letter_id="W">0.000000</value>
|
|
|
793 <value letter_id="Y">0.000000</value>
|
|
|
794 </alphabet_array>
|
|
|
795 </alphabet_matrix>
|
|
|
796 </probabilities>
|
|
|
797 <regular_expression>
|
|
|
798 [GA][GA][GC][GA]TATA[AT]AA
|
|
|
799 </regular_expression>
|
|
|
800 <contributing_sites>
|
|
|
801 <contributing_site sequence_id="sequence_24" position="12" strand="none" pvalue="1.06e-06" >
|
|
|
802 <left_flank>AAGGCCAGGA</left_flank>
|
|
|
803 <site>
|
|
|
804 <letter_ref letter_id="G"/>
|
|
|
805 <letter_ref letter_id="G"/>
|
|
|
806 <letter_ref letter_id="G"/>
|
|
|
807 <letter_ref letter_id="G"/>
|
|
|
808 <letter_ref letter_id="T"/>
|
|
|
809 <letter_ref letter_id="A"/>
|
|
|
810 <letter_ref letter_id="T"/>
|
|
|
811 <letter_ref letter_id="A"/>
|
|
|
812 <letter_ref letter_id="A"/>
|
|
|
813 <letter_ref letter_id="A"/>
|
|
|
814 <letter_ref letter_id="A"/>
|
|
|
815 </site>
|
|
|
816 <right_flank>GCCTGAGAGC</right_flank>
|
|
|
817 </contributing_site>
|
|
|
818 <contributing_site sequence_id="sequence_25" position="36" strand="none" pvalue="3.41e-06" >
|
|
|
819 <left_flank>ACAGGCCCTG</left_flank>
|
|
|
820 <site>
|
|
|
821 <letter_ref letter_id="G"/>
|
|
|
822 <letter_ref letter_id="G"/>
|
|
|
823 <letter_ref letter_id="C"/>
|
|
|
824 <letter_ref letter_id="A"/>
|
|
|
825 <letter_ref letter_id="T"/>
|
|
|
826 <letter_ref letter_id="A"/>
|
|
|
827 <letter_ref letter_id="T"/>
|
|
|
828 <letter_ref letter_id="A"/>
|
|
|
829 <letter_ref letter_id="A"/>
|
|
|
830 <letter_ref letter_id="A"/>
|
|
|
831 <letter_ref letter_id="A"/>
|
|
|
832 </site>
|
|
|
833 <right_flank>GCC</right_flank>
|
|
|
834 </contributing_site>
|
|
|
835 <contributing_site sequence_id="sequence_19" position="9" strand="none" pvalue="3.41e-06" >
|
|
|
836 <left_flank>CAGGCCCTG</left_flank>
|
|
|
837 <site>
|
|
|
838 <letter_ref letter_id="G"/>
|
|
|
839 <letter_ref letter_id="G"/>
|
|
|
840 <letter_ref letter_id="C"/>
|
|
|
841 <letter_ref letter_id="A"/>
|
|
|
842 <letter_ref letter_id="T"/>
|
|
|
843 <letter_ref letter_id="A"/>
|
|
|
844 <letter_ref letter_id="T"/>
|
|
|
845 <letter_ref letter_id="A"/>
|
|
|
846 <letter_ref letter_id="A"/>
|
|
|
847 <letter_ref letter_id="A"/>
|
|
|
848 <letter_ref letter_id="A"/>
|
|
|
849 </site>
|
|
|
850 <right_flank>GCCCCAGCAG</right_flank>
|
|
|
851 </contributing_site>
|
|
|
852 <contributing_site sequence_id="sequence_9" position="13" strand="none" pvalue="3.41e-06" >
|
|
|
853 <left_flank>GATTCACTGA</left_flank>
|
|
|
854 <site>
|
|
|
855 <letter_ref letter_id="G"/>
|
|
|
856 <letter_ref letter_id="G"/>
|
|
|
857 <letter_ref letter_id="C"/>
|
|
|
858 <letter_ref letter_id="A"/>
|
|
|
859 <letter_ref letter_id="T"/>
|
|
|
860 <letter_ref letter_id="A"/>
|
|
|
861 <letter_ref letter_id="T"/>
|
|
|
862 <letter_ref letter_id="A"/>
|
|
|
863 <letter_ref letter_id="A"/>
|
|
|
864 <letter_ref letter_id="A"/>
|
|
|
865 <letter_ref letter_id="A"/>
|
|
|
866 </site>
|
|
|
867 <right_flank>GGCCCTCTGC</right_flank>
|
|
|
868 </contributing_site>
|
|
|
869 <contributing_site sequence_id="sequence_21" position="7" strand="none" pvalue="4.00e-06" >
|
|
|
870 <left_flank>CCAAGGA</left_flank>
|
|
|
871 <site>
|
|
|
872 <letter_ref letter_id="G"/>
|
|
|
873 <letter_ref letter_id="G"/>
|
|
|
874 <letter_ref letter_id="A"/>
|
|
|
875 <letter_ref letter_id="G"/>
|
|
|
876 <letter_ref letter_id="T"/>
|
|
|
877 <letter_ref letter_id="A"/>
|
|
|
878 <letter_ref letter_id="T"/>
|
|
|
879 <letter_ref letter_id="A"/>
|
|
|
880 <letter_ref letter_id="A"/>
|
|
|
881 <letter_ref letter_id="A"/>
|
|
|
882 <letter_ref letter_id="A"/>
|
|
|
883 </site>
|
|
|
884 <right_flank>GCCCCACAAA</right_flank>
|
|
|
885 </contributing_site>
|
|
|
886 <contributing_site sequence_id="sequence_13" position="13" strand="none" pvalue="5.01e-06" >
|
|
|
887 <left_flank>CCACCAGCTT</left_flank>
|
|
|
888 <site>
|
|
|
889 <letter_ref letter_id="G"/>
|
|
|
890 <letter_ref letter_id="A"/>
|
|
|
891 <letter_ref letter_id="G"/>
|
|
|
892 <letter_ref letter_id="G"/>
|
|
|
893 <letter_ref letter_id="T"/>
|
|
|
894 <letter_ref letter_id="A"/>
|
|
|
895 <letter_ref letter_id="T"/>
|
|
|
896 <letter_ref letter_id="A"/>
|
|
|
897 <letter_ref letter_id="A"/>
|
|
|
898 <letter_ref letter_id="A"/>
|
|
|
899 <letter_ref letter_id="A"/>
|
|
|
900 </site>
|
|
|
901 <right_flank>AGCCCTGTAC</right_flank>
|
|
|
902 </contributing_site>
|
|
|
903 <contributing_site sequence_id="sequence_23" position="15" strand="none" pvalue="6.06e-06" >
|
|
|
904 <left_flank>ATACCCAGGG</left_flank>
|
|
|
905 <site>
|
|
|
906 <letter_ref letter_id="A"/>
|
|
|
907 <letter_ref letter_id="G"/>
|
|
|
908 <letter_ref letter_id="G"/>
|
|
|
909 <letter_ref letter_id="G"/>
|
|
|
910 <letter_ref letter_id="T"/>
|
|
|
911 <letter_ref letter_id="A"/>
|
|
|
912 <letter_ref letter_id="T"/>
|
|
|
913 <letter_ref letter_id="A"/>
|
|
|
914 <letter_ref letter_id="A"/>
|
|
|
915 <letter_ref letter_id="A"/>
|
|
|
916 <letter_ref letter_id="A"/>
|
|
|
917 </site>
|
|
|
918 <right_flank>CCTCAGCAGC</right_flank>
|
|
|
919 </contributing_site>
|
|
|
920 <contributing_site sequence_id="sequence_15" position="21" strand="none" pvalue="8.67e-06" >
|
|
|
921 <left_flank>AATCACTGAG</left_flank>
|
|
|
922 <site>
|
|
|
923 <letter_ref letter_id="G"/>
|
|
|
924 <letter_ref letter_id="A"/>
|
|
|
925 <letter_ref letter_id="T"/>
|
|
|
926 <letter_ref letter_id="G"/>
|
|
|
927 <letter_ref letter_id="T"/>
|
|
|
928 <letter_ref letter_id="A"/>
|
|
|
929 <letter_ref letter_id="T"/>
|
|
|
930 <letter_ref letter_id="A"/>
|
|
|
931 <letter_ref letter_id="A"/>
|
|
|
932 <letter_ref letter_id="A"/>
|
|
|
933 <letter_ref letter_id="A"/>
|
|
|
934 </site>
|
|
|
935 <right_flank>GTCCCAGGGA</right_flank>
|
|
|
936 </contributing_site>
|
|
|
937 <contributing_site sequence_id="sequence_12" position="18" strand="none" pvalue="8.67e-06" >
|
|
|
938 <left_flank>CACCAGAGCT</left_flank>
|
|
|
939 <site>
|
|
|
940 <letter_ref letter_id="G"/>
|
|
|
941 <letter_ref letter_id="G"/>
|
|
|
942 <letter_ref letter_id="G"/>
|
|
|
943 <letter_ref letter_id="A"/>
|
|
|
944 <letter_ref letter_id="T"/>
|
|
|
945 <letter_ref letter_id="A"/>
|
|
|
946 <letter_ref letter_id="T"/>
|
|
|
947 <letter_ref letter_id="A"/>
|
|
|
948 <letter_ref letter_id="T"/>
|
|
|
949 <letter_ref letter_id="A"/>
|
|
|
950 <letter_ref letter_id="A"/>
|
|
|
951 </site>
|
|
|
952 <right_flank>AGAAGGTTCT</right_flank>
|
|
|
953 </contributing_site>
|
|
|
954 <contributing_site sequence_id="sequence_11" position="16" strand="none" pvalue="8.67e-06" >
|
|
|
955 <left_flank>CACTATTGAA</left_flank>
|
|
|
956 <site>
|
|
|
957 <letter_ref letter_id="G"/>
|
|
|
958 <letter_ref letter_id="A"/>
|
|
|
959 <letter_ref letter_id="T"/>
|
|
|
960 <letter_ref letter_id="G"/>
|
|
|
961 <letter_ref letter_id="T"/>
|
|
|
962 <letter_ref letter_id="A"/>
|
|
|
963 <letter_ref letter_id="T"/>
|
|
|
964 <letter_ref letter_id="A"/>
|
|
|
965 <letter_ref letter_id="A"/>
|
|
|
966 <letter_ref letter_id="A"/>
|
|
|
967 <letter_ref letter_id="A"/>
|
|
|
968 </site>
|
|
|
969 <right_flank>TTTCATTTGC</right_flank>
|
|
|
970 </contributing_site>
|
|
|
971 <contributing_site sequence_id="sequence_22" position="2" strand="none" pvalue="1.21e-05" >
|
|
|
972 <left_flank>GA</left_flank>
|
|
|
973 <site>
|
|
|
974 <letter_ref letter_id="G"/>
|
|
|
975 <letter_ref letter_id="A"/>
|
|
|
976 <letter_ref letter_id="C"/>
|
|
|
977 <letter_ref letter_id="A"/>
|
|
|
978 <letter_ref letter_id="T"/>
|
|
|
979 <letter_ref letter_id="A"/>
|
|
|
980 <letter_ref letter_id="T"/>
|
|
|
981 <letter_ref letter_id="A"/>
|
|
|
982 <letter_ref letter_id="A"/>
|
|
|
983 <letter_ref letter_id="A"/>
|
|
|
984 <letter_ref letter_id="A"/>
|
|
|
985 </site>
|
|
|
986 <right_flank>GCCAACATCC</right_flank>
|
|
|
987 </contributing_site>
|
|
|
988 <contributing_site sequence_id="sequence_28" position="32" strand="none" pvalue="1.59e-05" >
|
|
|
989 <left_flank>CCGGCGGGGC</left_flank>
|
|
|
990 <site>
|
|
|
991 <letter_ref letter_id="G"/>
|
|
|
992 <letter_ref letter_id="G"/>
|
|
|
993 <letter_ref letter_id="G"/>
|
|
|
994 <letter_ref letter_id="G"/>
|
|
|
995 <letter_ref letter_id="T"/>
|
|
|
996 <letter_ref letter_id="A"/>
|
|
|
997 <letter_ref letter_id="T"/>
|
|
|
998 <letter_ref letter_id="A"/>
|
|
|
999 <letter_ref letter_id="A"/>
|
|
|
1000 <letter_ref letter_id="A"/>
|
|
|
1001 <letter_ref letter_id="G"/>
|
|
|
1002 </site>
|
|
|
1003 <right_flank>GGGGCGG</right_flank>
|
|
|
1004 </contributing_site>
|
|
|
1005 <contributing_site sequence_id="sequence_20" position="4" strand="none" pvalue="1.59e-05" >
|
|
|
1006 <left_flank>CAGA</left_flank>
|
|
|
1007 <site>
|
|
|
1008 <letter_ref letter_id="G"/>
|
|
|
1009 <letter_ref letter_id="G"/>
|
|
|
1010 <letter_ref letter_id="G"/>
|
|
|
1011 <letter_ref letter_id="G"/>
|
|
|
1012 <letter_ref letter_id="T"/>
|
|
|
1013 <letter_ref letter_id="A"/>
|
|
|
1014 <letter_ref letter_id="T"/>
|
|
|
1015 <letter_ref letter_id="A"/>
|
|
|
1016 <letter_ref letter_id="A"/>
|
|
|
1017 <letter_ref letter_id="A"/>
|
|
|
1018 <letter_ref letter_id="G"/>
|
|
|
1019 </site>
|
|
|
1020 <right_flank>GTTCCGACCA</right_flank>
|
|
|
1021 </contributing_site>
|
|
|
1022 <contributing_site sequence_id="sequence_6" position="15" strand="none" pvalue="1.68e-05" >
|
|
|
1023 <left_flank>CCCACTACTT</left_flank>
|
|
|
1024 <site>
|
|
|
1025 <letter_ref letter_id="A"/>
|
|
|
1026 <letter_ref letter_id="G"/>
|
|
|
1027 <letter_ref letter_id="A"/>
|
|
|
1028 <letter_ref letter_id="G"/>
|
|
|
1029 <letter_ref letter_id="T"/>
|
|
|
1030 <letter_ref letter_id="A"/>
|
|
|
1031 <letter_ref letter_id="T"/>
|
|
|
1032 <letter_ref letter_id="A"/>
|
|
|
1033 <letter_ref letter_id="A"/>
|
|
|
1034 <letter_ref letter_id="A"/>
|
|
|
1035 <letter_ref letter_id="A"/>
|
|
|
1036 </site>
|
|
|
1037 <right_flank>TCATTCTGAG</right_flank>
|
|
|
1038 </contributing_site>
|
|
|
1039 <contributing_site sequence_id="sequence_14" position="19" strand="none" pvalue="2.03e-05" >
|
|
|
1040 <left_flank>CACCAGCAAG</left_flank>
|
|
|
1041 <site>
|
|
|
1042 <letter_ref letter_id="G"/>
|
|
|
1043 <letter_ref letter_id="A"/>
|
|
|
1044 <letter_ref letter_id="T"/>
|
|
|
1045 <letter_ref letter_id="A"/>
|
|
|
1046 <letter_ref letter_id="T"/>
|
|
|
1047 <letter_ref letter_id="A"/>
|
|
|
1048 <letter_ref letter_id="T"/>
|
|
|
1049 <letter_ref letter_id="A"/>
|
|
|
1050 <letter_ref letter_id="A"/>
|
|
|
1051 <letter_ref letter_id="A"/>
|
|
|
1052 <letter_ref letter_id="A"/>
|
|
|
1053 </site>
|
|
|
1054 <right_flank>GCTCAGGAGT</right_flank>
|
|
|
1055 </contributing_site>
|
|
|
1056 <contributing_site sequence_id="sequence_4" position="12" strand="none" pvalue="3.06e-05" >
|
|
|
1057 <left_flank>CAGGTCTAAG</left_flank>
|
|
|
1058 <site>
|
|
|
1059 <letter_ref letter_id="A"/>
|
|
|
1060 <letter_ref letter_id="G"/>
|
|
|
1061 <letter_ref letter_id="C"/>
|
|
|
1062 <letter_ref letter_id="A"/>
|
|
|
1063 <letter_ref letter_id="T"/>
|
|
|
1064 <letter_ref letter_id="A"/>
|
|
|
1065 <letter_ref letter_id="T"/>
|
|
|
1066 <letter_ref letter_id="A"/>
|
|
|
1067 <letter_ref letter_id="T"/>
|
|
|
1068 <letter_ref letter_id="A"/>
|
|
|
1069 <letter_ref letter_id="A"/>
|
|
|
1070 </site>
|
|
|
1071 <right_flank>CTTGGAGTCC</right_flank>
|
|
|
1072 </contributing_site>
|
|
|
1073 <contributing_site sequence_id="sequence_0" position="39" strand="none" pvalue="3.06e-05" >
|
|
|
1074 <left_flank>CCTCGGGACG</left_flank>
|
|
|
1075 <site>
|
|
|
1076 <letter_ref letter_id="T"/>
|
|
|
1077 <letter_ref letter_id="G"/>
|
|
|
1078 <letter_ref letter_id="G"/>
|
|
|
1079 <letter_ref letter_id="G"/>
|
|
|
1080 <letter_ref letter_id="T"/>
|
|
|
1081 <letter_ref letter_id="A"/>
|
|
|
1082 <letter_ref letter_id="T"/>
|
|
|
1083 <letter_ref letter_id="A"/>
|
|
|
1084 <letter_ref letter_id="T"/>
|
|
|
1085 <letter_ref letter_id="A"/>
|
|
|
1086 <letter_ref letter_id="A"/>
|
|
|
1087 </site>
|
|
|
1088 <right_flank></right_flank>
|
|
|
1089 </contributing_site>
|
|
|
1090 <contributing_site sequence_id="sequence_18" position="37" strand="none" pvalue="3.82e-05" >
|
|
|
1091 <left_flank>CGTGGTCGCG</left_flank>
|
|
|
1092 <site>
|
|
|
1093 <letter_ref letter_id="G"/>
|
|
|
1094 <letter_ref letter_id="G"/>
|
|
|
1095 <letter_ref letter_id="G"/>
|
|
|
1096 <letter_ref letter_id="G"/>
|
|
|
1097 <letter_ref letter_id="T"/>
|
|
|
1098 <letter_ref letter_id="A"/>
|
|
|
1099 <letter_ref letter_id="T"/>
|
|
|
1100 <letter_ref letter_id="A"/>
|
|
|
1101 <letter_ref letter_id="A"/>
|
|
|
1102 <letter_ref letter_id="C"/>
|
|
|
1103 <letter_ref letter_id="A"/>
|
|
|
1104 </site>
|
|
|
1105 <right_flank>GC</right_flank>
|
|
|
1106 </contributing_site>
|
|
|
1107 <contributing_site sequence_id="sequence_5" position="0" strand="none" pvalue="3.82e-05" >
|
|
|
1108 <left_flank></left_flank>
|
|
|
1109 <site>
|
|
|
1110 <letter_ref letter_id="A"/>
|
|
|
1111 <letter_ref letter_id="A"/>
|
|
|
1112 <letter_ref letter_id="C"/>
|
|
|
1113 <letter_ref letter_id="G"/>
|
|
|
1114 <letter_ref letter_id="T"/>
|
|
|
1115 <letter_ref letter_id="A"/>
|
|
|
1116 <letter_ref letter_id="T"/>
|
|
|
1117 <letter_ref letter_id="A"/>
|
|
|
1118 <letter_ref letter_id="T"/>
|
|
|
1119 <letter_ref letter_id="A"/>
|
|
|
1120 <letter_ref letter_id="A"/>
|
|
|
1121 </site>
|
|
|
1122 <right_flank>ATGGTCCTGT</right_flank>
|
|
|
1123 </contributing_site>
|
|
|
1124 <contributing_site sequence_id="sequence_29" position="30" strand="none" pvalue="4.02e-05" >
|
|
|
1125 <left_flank>GCTGCCGGTG</left_flank>
|
|
|
1126 <site>
|
|
|
1127 <letter_ref letter_id="A"/>
|
|
|
1128 <letter_ref letter_id="G"/>
|
|
|
1129 <letter_ref letter_id="C"/>
|
|
|
1130 <letter_ref letter_id="G"/>
|
|
|
1131 <letter_ref letter_id="T"/>
|
|
|
1132 <letter_ref letter_id="A"/>
|
|
|
1133 <letter_ref letter_id="T"/>
|
|
|
1134 <letter_ref letter_id="A"/>
|
|
|
1135 <letter_ref letter_id="A"/>
|
|
|
1136 <letter_ref letter_id="A"/>
|
|
|
1137 <letter_ref letter_id="G"/>
|
|
|
1138 </site>
|
|
|
1139 <right_flank>GCCCTGGCG</right_flank>
|
|
|
1140 </contributing_site>
|
|
|
1141 <contributing_site sequence_id="sequence_1" position="27" strand="none" pvalue="5.52e-05" >
|
|
|
1142 <left_flank>AGTCACAAGT</left_flank>
|
|
|
1143 <site>
|
|
|
1144 <letter_ref letter_id="G"/>
|
|
|
1145 <letter_ref letter_id="A"/>
|
|
|
1146 <letter_ref letter_id="G"/>
|
|
|
1147 <letter_ref letter_id="T"/>
|
|
|
1148 <letter_ref letter_id="T"/>
|
|
|
1149 <letter_ref letter_id="A"/>
|
|
|
1150 <letter_ref letter_id="T"/>
|
|
|
1151 <letter_ref letter_id="A"/>
|
|
|
1152 <letter_ref letter_id="A"/>
|
|
|
1153 <letter_ref letter_id="A"/>
|
|
|
1154 <letter_ref letter_id="A"/>
|
|
|
1155 </site>
|
|
|
1156 <right_flank>GGGTCGCACG</right_flank>
|
|
|
1157 </contributing_site>
|
|
|
1158 <contributing_site sequence_id="sequence_3" position="14" strand="none" pvalue="5.94e-05" >
|
|
|
1159 <left_flank>CCCAGGTTTC</left_flank>
|
|
|
1160 <site>
|
|
|
1161 <letter_ref letter_id="T"/>
|
|
|
1162 <letter_ref letter_id="G"/>
|
|
|
1163 <letter_ref letter_id="A"/>
|
|
|
1164 <letter_ref letter_id="G"/>
|
|
|
1165 <letter_ref letter_id="T"/>
|
|
|
1166 <letter_ref letter_id="A"/>
|
|
|
1167 <letter_ref letter_id="T"/>
|
|
|
1168 <letter_ref letter_id="A"/>
|
|
|
1169 <letter_ref letter_id="T"/>
|
|
|
1170 <letter_ref letter_id="A"/>
|
|
|
1171 <letter_ref letter_id="A"/>
|
|
|
1172 </site>
|
|
|
1173 <right_flank>TCGCCGCACC</right_flank>
|
|
|
1174 </contributing_site>
|
|
|
1175 <contributing_site sequence_id="sequence_16" position="22" strand="none" pvalue="6.78e-05" >
|
|
|
1176 <left_flank>AGTTTCAGTT</left_flank>
|
|
|
1177 <site>
|
|
|
1178 <letter_ref letter_id="G"/>
|
|
|
1179 <letter_ref letter_id="G"/>
|
|
|
1180 <letter_ref letter_id="C"/>
|
|
|
1181 <letter_ref letter_id="A"/>
|
|
|
1182 <letter_ref letter_id="T"/>
|
|
|
1183 <letter_ref letter_id="C"/>
|
|
|
1184 <letter_ref letter_id="T"/>
|
|
|
1185 <letter_ref letter_id="A"/>
|
|
|
1186 <letter_ref letter_id="A"/>
|
|
|
1187 <letter_ref letter_id="A"/>
|
|
|
1188 <letter_ref letter_id="A"/>
|
|
|
1189 </site>
|
|
|
1190 <right_flank>attatataac</right_flank>
|
|
|
1191 </contributing_site>
|
|
|
1192 <contributing_site sequence_id="sequence_7" position="2" strand="none" pvalue="2.08e-04" >
|
|
|
1193 <left_flank>TC</left_flank>
|
|
|
1194 <site>
|
|
|
1195 <letter_ref letter_id="A"/>
|
|
|
1196 <letter_ref letter_id="G"/>
|
|
|
1197 <letter_ref letter_id="A"/>
|
|
|
1198 <letter_ref letter_id="G"/>
|
|
|
1199 <letter_ref letter_id="T"/>
|
|
|
1200 <letter_ref letter_id="A"/>
|
|
|
1201 <letter_ref letter_id="T"/>
|
|
|
1202 <letter_ref letter_id="A"/>
|
|
|
1203 <letter_ref letter_id="T"/>
|
|
|
1204 <letter_ref letter_id="A"/>
|
|
|
1205 <letter_ref letter_id="T"/>
|
|
|
1206 </site>
|
|
|
1207 <right_flank>AAATGTTCCT</right_flank>
|
|
|
1208 </contributing_site>
|
|
|
1209 <contributing_site sequence_id="sequence_8" position="13" strand="none" pvalue="4.05e-04" >
|
|
|
1210 <left_flank>TATAACTCAG</left_flank>
|
|
|
1211 <site>
|
|
|
1212 <letter_ref letter_id="G"/>
|
|
|
1213 <letter_ref letter_id="T"/>
|
|
|
1214 <letter_ref letter_id="T"/>
|
|
|
1215 <letter_ref letter_id="G"/>
|
|
|
1216 <letter_ref letter_id="G"/>
|
|
|
1217 <letter_ref letter_id="A"/>
|
|
|
1218 <letter_ref letter_id="T"/>
|
|
|
1219 <letter_ref letter_id="A"/>
|
|
|
1220 <letter_ref letter_id="A"/>
|
|
|
1221 <letter_ref letter_id="A"/>
|
|
|
1222 <letter_ref letter_id="A"/>
|
|
|
1223 </site>
|
|
|
1224 <right_flank>TAATTTGTAC</right_flank>
|
|
|
1225 </contributing_site>
|
|
|
1226 </contributing_sites>
|
|
|
1227 </motif>
|
|
|
1228 </motifs>
|
|
|
1229 <scanned_sites_summary p_thresh="0.0001">
|
|
|
1230 <scanned_sites sequence_id="sequence_0" pvalue="1.22e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="39" pvalue="3.06e-05"/>
|
|
|
1231 </scanned_sites>
|
|
|
1232 <scanned_sites sequence_id="sequence_1" pvalue="2.21e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="27" pvalue="5.52e-05"/>
|
|
|
1233 </scanned_sites>
|
|
|
1234 <scanned_sites sequence_id="sequence_2" pvalue="7.29e-01" num_sites="0"></scanned_sites>
|
|
|
1235 <scanned_sites sequence_id="sequence_3" pvalue="2.37e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="14" pvalue="5.94e-05"/>
|
|
|
1236 </scanned_sites>
|
|
|
1237 <scanned_sites sequence_id="sequence_4" pvalue="1.22e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="12" pvalue="3.06e-05"/>
|
|
|
1238 </scanned_sites>
|
|
|
1239 <scanned_sites sequence_id="sequence_5" pvalue="1.53e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="0" pvalue="3.82e-05"/>
|
|
|
1240 </scanned_sites>
|
|
|
1241 <scanned_sites sequence_id="sequence_6" pvalue="6.70e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="15" pvalue="1.68e-05"/>
|
|
|
1242 </scanned_sites>
|
|
|
1243 <scanned_sites sequence_id="sequence_7" pvalue="1.81e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="4" pvalue="4.54e-05"/>
|
|
|
1244 </scanned_sites>
|
|
|
1245 <scanned_sites sequence_id="sequence_8" pvalue="1.61e-02" num_sites="0"></scanned_sites>
|
|
|
1246 <scanned_sites sequence_id="sequence_9" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="13" pvalue="3.41e-06"/>
|
|
|
1247 </scanned_sites>
|
|
|
1248 <scanned_sites sequence_id="sequence_10" pvalue="1.99e-01" num_sites="0"></scanned_sites>
|
|
|
1249 <scanned_sites sequence_id="sequence_11" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="16" pvalue="8.67e-06"/>
|
|
|
1250 </scanned_sites>
|
|
|
1251 <scanned_sites sequence_id="sequence_12" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="18" pvalue="8.67e-06"/>
|
|
|
1252 </scanned_sites>
|
|
|
1253 <scanned_sites sequence_id="sequence_13" pvalue="2.01e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="13" pvalue="5.01e-06"/>
|
|
|
1254 </scanned_sites>
|
|
|
1255 <scanned_sites sequence_id="sequence_14" pvalue="8.11e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="19" pvalue="2.03e-05"/>
|
|
|
1256 </scanned_sites>
|
|
|
1257 <scanned_sites sequence_id="sequence_15" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="21" pvalue="8.67e-06"/>
|
|
|
1258 </scanned_sites>
|
|
|
1259 <scanned_sites sequence_id="sequence_16" pvalue="2.71e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="22" pvalue="6.78e-05"/>
|
|
|
1260 </scanned_sites>
|
|
|
1261 <scanned_sites sequence_id="sequence_17" pvalue="8.23e-02" num_sites="0"></scanned_sites>
|
|
|
1262 <scanned_sites sequence_id="sequence_18" pvalue="1.53e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="37" pvalue="3.82e-05"/>
|
|
|
1263 </scanned_sites>
|
|
|
1264 <scanned_sites sequence_id="sequence_19" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="9" pvalue="3.41e-06"/>
|
|
|
1265 </scanned_sites>
|
|
|
1266 <scanned_sites sequence_id="sequence_20" pvalue="6.37e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="4" pvalue="1.59e-05"/>
|
|
|
1267 </scanned_sites>
|
|
|
1268 <scanned_sites sequence_id="sequence_21" pvalue="1.60e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="7" pvalue="4.00e-06"/>
|
|
|
1269 </scanned_sites>
|
|
|
1270 <scanned_sites sequence_id="sequence_22" pvalue="4.83e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="2" pvalue="1.21e-05"/>
|
|
|
1271 </scanned_sites>
|
|
|
1272 <scanned_sites sequence_id="sequence_23" pvalue="2.43e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="15" pvalue="6.06e-06"/>
|
|
|
1273 </scanned_sites>
|
|
|
1274 <scanned_sites sequence_id="sequence_24" pvalue="4.26e-05" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="12" pvalue="1.06e-06"/>
|
|
|
1275 </scanned_sites>
|
|
|
1276 <scanned_sites sequence_id="sequence_25" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="36" pvalue="3.41e-06"/>
|
|
|
1277 </scanned_sites>
|
|
|
1278 <scanned_sites sequence_id="sequence_26" pvalue="4.30e-02" num_sites="0"></scanned_sites>
|
|
|
1279 <scanned_sites sequence_id="sequence_27" pvalue="4.30e-02" num_sites="0"></scanned_sites>
|
|
|
1280 <scanned_sites sequence_id="sequence_28" pvalue="6.37e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="32" pvalue="1.59e-05"/>
|
|
|
1281 </scanned_sites>
|
|
|
1282 <scanned_sites sequence_id="sequence_29" pvalue="1.61e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="30" pvalue="4.02e-05"/>
|
|
|
1283 </scanned_sites>
|
|
|
1284 </scanned_sites_summary>
|
|
|
1285 </MEME>
|
