Mercurial > repos > greg > linear_fascile_evaluation
diff linear_fascile_evaluation.xml @ 0:cbfa8c336751 draft
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author | greg |
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date | Tue, 28 Nov 2017 13:18:32 -0500 |
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children | 5daa2541c7fa |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/linear_fascile_evaluation.xml Tue Nov 28 13:18:32 2017 -0500 @@ -0,0 +1,44 @@ +<tool id="linear_fascile_evaluation" name="Linear fascicle evaluation" version="0.13.0"> + <description>(LiFE) for tractography results</description> + <requirements> + <requirement type="package" version="0.13.0">dipy</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ +python '$__tool_directory__/linear_fascile_evaluation.py' +--candidates '$candidates' +--output_life_candidates '$output_life_candidates' +--output_life_optimized '$output_life_optimized' +--output_error_histograms '$output_error_histograms' +--output_beta_histogram '$output_beta_histogram' +--output_spatial_errors 'output_spatial_errors' + ]]></command> + <inputs> + <param name="candidates" type="select" label="Candidates"> + <option value="lr-superiorfrontal.trk" selected="true">lr-superiorfrontal.trk</option> + </param> + </inputs> + <outputs> + <data name="output_spatial_errors" format="png" label="${tool.name}: Spatial Errors" /> + <data name="output_beta_histogram" format="png" label="${tool.name}: Beta Histogram" /> + <data name="output_error_histograms" format="png" label="${tool.name}: Error Histograms" /> + <data name="output_life_optimized" format="png" label="${tool.name}: LiFE Optimized Streamlines" /> + <data name="output_life_candidates" format="png" label="${tool.name}: LiFE Candidates" /> + </outputs> + <tests> + <test> + </test> + </tests> + <help> +**What it does** + +Uses a forward model that predicts the signal from each of a set of streamlines, and fits a +linear model to these simultaneous predictions for evaluation of tractography results. + +----- + +**Options** + + </help> + <citations> + </citations> +</tool>