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comparison linear_fascile_evaluation.xml @ 0:cbfa8c336751 draft

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author greg
date Tue, 28 Nov 2017 13:18:32 -0500
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1 <tool id="linear_fascile_evaluation" name="Linear fascicle evaluation" version="0.13.0">
2 <description>(LiFE) for tractography results</description>
3 <requirements>
4 <requirement type="package" version="0.13.0">dipy</requirement>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/linear_fascile_evaluation.py'
8 --candidates '$candidates'
9 --output_life_candidates '$output_life_candidates'
10 --output_life_optimized '$output_life_optimized'
11 --output_error_histograms '$output_error_histograms'
12 --output_beta_histogram '$output_beta_histogram'
13 --output_spatial_errors 'output_spatial_errors'
14 ]]></command>
15 <inputs>
16 <param name="candidates" type="select" label="Candidates">
17 <option value="lr-superiorfrontal.trk" selected="true">lr-superiorfrontal.trk</option>
18 </param>
19 </inputs>
20 <outputs>
21 <data name="output_spatial_errors" format="png" label="${tool.name}: Spatial Errors" />
22 <data name="output_beta_histogram" format="png" label="${tool.name}: Beta Histogram" />
23 <data name="output_error_histograms" format="png" label="${tool.name}: Error Histograms" />
24 <data name="output_life_optimized" format="png" label="${tool.name}: LiFE Optimized Streamlines" />
25 <data name="output_life_candidates" format="png" label="${tool.name}: LiFE Candidates" />
26 </outputs>
27 <tests>
28 <test>
29 </test>
30 </tests>
31 <help>
32 **What it does**
33
34 Uses a forward model that predicts the signal from each of a set of streamlines, and fits a
35 linear model to these simultaneous predictions for evaluation of tractography results.
36
37 -----
38
39 **Options**
40
41 </help>
42 <citations>
43 </citations>
44 </tool>