Mercurial > repos > greg > kaks_analysis_barplot
comparison kaks_distribution.xml @ 5:8d18cb8396a7 draft default tip
Uploaded
| author | greg |
|---|---|
| date | Thu, 16 Mar 2017 14:41:39 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 4:a419970e9c19 | 5:8d18cb8396a7 |
|---|---|
| 1 <tool id="kaks_barplot" name="KaKsDistribution" version="1.0.0"> | |
| 2 <description>plots synonymous (ks) distribution and fit significant component</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.3.0">r-optparse</requirement> | |
| 5 </requirements> | |
| 6 <command> | |
| 7 <![CDATA[ | |
| 8 Rscript $__tool_directory__/kaks_distribution.R | |
| 9 -k '${kaks}' | |
| 10 -c '${components}' | |
| 11 -o "$output" | |
| 12 ]]> | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <param name="kaks" format="tabular" type="data" label="KaKs analysis file" /> | |
| 16 <param name="components" format="tabular" type="data" label="Significant components in the ks distribution" /> | |
| 17 </inputs> | |
| 18 <outputs> | |
| 19 <data name="output" format="pdf"/> | |
| 20 </outputs> | |
| 21 <tests> | |
| 22 <test> | |
| 23 <param name="kaks" value="kaks.tabular" ftype="tabular" /> | |
| 24 <param name="components" value="components.tabular" ftype="tabular" /> | |
| 25 <output name="output" file="output.pdf" ftype="pdf" compare="contains" /> | |
| 26 </test> | |
| 27 </tests> | |
| 28 <help> | |
| 29 **What it does** | |
| 30 | |
| 31 Draws a barplot of the significant components in the ks distribution. | |
| 32 </help> | |
| 33 <citations> | |
| 34 <citation type="bibtex"> | |
| 35 @article{None, | |
| 36 journal = {None}, | |
| 37 author = {1. Wafula EK}, | |
| 38 title = {Manuscript in preparation}, | |
| 39 year = {None}, | |
| 40 url = {https://github.com/dePamphilis/PlantTribes},} | |
| 41 </citation> | |
| 42 </citations> | |
| 43 </tool> |