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1 <tool id="kaks_barplot" name="KaKsDistribution" version="1.0.0">
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2 <description>plots synonymous (ks) distribution and fit significant component</description>
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3 <requirements>
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4 <requirement type="package" version="1.3.0">r-optparse</requirement>
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5 </requirements>
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6 <command>
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7 <![CDATA[
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8 Rscript $__tool_directory__/kaks_distribution.R
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9 -k '${kaks}'
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10 -c '${components}'
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11 -o "$output"
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12 ]]>
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13 </command>
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14 <inputs>
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15 <param name="kaks" format="tabular" type="data" label="KaKs analysis file" />
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16 <param name="components" format="tabular" type="data" label="Significant components in the ks distribution" />
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17 </inputs>
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18 <outputs>
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19 <data name="output" format="pdf"/>
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="kaks" value="kaks.tabular" ftype="tabular" />
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24 <param name="components" value="components.tabular" ftype="tabular" />
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25 <output name="output" file="output.pdf" ftype="pdf" compare="contains" />
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26 </test>
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27 </tests>
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28 <help>
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29 **What it does**
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30
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31 Draws a barplot of the significant components in the ks distribution.
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32 </help>
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33 <citations>
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34 <citation type="bibtex">
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35 @article{None,
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36 journal = {None},
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37 author = {1. Wafula EK},
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38 title = {Manuscript in preparation},
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39 year = {None},
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40 url = {https://github.com/dePamphilis/PlantTribes},}
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41 </citation>
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42 </citations>
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43 </tool>
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