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changeset 31:9b78e5c2a14e draft

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Uploaded
author greg
date Mon, 01 May 2017 12:51:04 -0400
parents 715ca3160a27
children 9821735dccc4
files kaks_analysis.xml
diffstat 1 files changed, 11 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/kaks_analysis.xml	Mon May 01 12:41:36 2017 -0400
+++ b/kaks_analysis.xml	Mon May 01 12:51:04 2017 -0400
@@ -219,7 +219,7 @@
 
     - **match score** - number of base matches in a pairwise sequence alignment divided by the length of shorter sequence.  Positions in the alignment corresponding to gaps are not considered.  The score is restricted to the range 0.3 - 1.0.
 
-  - **Species rates recalibration configuration** - select 'Yes' to recalibrate synonymous substitution rates of a species using a predetermined evolutionary rate.  Recalibration evolutionary rate can be determined from a species tree inferred from a collection of conserved single copy genes from taxa of interest as described in Cui et al., 2006.  Rate recalibration applies only to paralogous comparisons.
+  - **Species rates recalibration configuration** - select 'Yes' to recalibrate synonymous substitution rates of a species using a predetermined evolutionary rate.  Recalibration evolutionary rate can be determined from a species tree inferred from a collection of conserved single copy genes from taxa of interest as described in [7].  Rate recalibration applies only to paralogous comparisons.
 
     - **recalibration rate** - a predetermined evolutionary recalibration rate.
 
@@ -291,5 +291,15 @@
             number = {2},
             pages = {1-14},}
         </citation>
+        <citation type="bibtex">
+            @article{Cui2006,
+            journal = {Genome Research},
+            author = {7. Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, Albert VA},
+            title = {Widespread genome duplications throughout the history of flowering plants},
+            year = {2006},
+            volume = {16},
+            number = {6},
+            pages = {738-749},}
+        </citation>
     </citations>
 </tool>