Mercurial > repos > greg > ideas_preprocessor
changeset 29:3b3001355f44 draft
Uploaded
| author | greg |
|---|---|
| date | Tue, 06 Feb 2018 08:24:35 -0500 |
| parents | 55d264cd49e8 |
| children | 0cb6ff8ba6df |
| files | ideas_preprocessor.R |
| diffstat | 1 files changed, 10 insertions(+), 4 deletions(-) [+] |
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--- a/ideas_preprocessor.R Mon Feb 05 13:47:47 2018 -0500 +++ b/ideas_preprocessor.R Tue Feb 06 08:24:35 2018 -0500 @@ -102,11 +102,17 @@ to_path = paste(opt$output_files_path, "tmp.tar.gz", sep="/"); file.rename("tmp.tar.gz", to_path); # Handle file names for display in the primary dataset if necessary. -if (!is.null(opt$chrom_bed_input) && !is.null(opt$chromosome_windows)) { - # Renane opt$chrom_bed_input to be chromosomes.bed - # and make a copy of it in the output directory. - to_path = paste(opt$output_files_path, "chromosomes.bed", sep="/"); +to_path = paste(opt$output_files_path, "chromosomes.bed", sep="/"); +if (is.null(opt$chrom_bed_input) { + # Move cbi_file to the output directory, + # naming it chromosomes.bed. + file.rename(cbi_file, to_path); +} else { + # Copy opt$chrom_bed_input to the output + # directory, naming it chromosomes.bed. file.copy(opt$chrom_bed_input, to_path); +} +if (!is.null(opt$chromosome_windows)) { # Move chromosome_windows.txt to the output directory. to_path = paste(opt$output_files_path, opt$chromosome_windows, sep="/"); file.rename(opt$chromosome_windows, to_path);