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1 name: ideas
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2 owner: greg
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3 description: |
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4 Contains a tool that employs the IDEAS (Integrative and Discriminative Epigenome Annotation System) method for jointly and
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5 quantitatively characterizing multivariate epigenetic landscapes in many cell types, tissues or conditions
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6 homepage_url: http://sites.stat.psu.edu/~yzz2/IDEAS/
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7 long_description: |
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8 Contains a tool that employs the IDEAS (Integrative and Discriminative Epigenome Annotation System) method for jointly and
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9 quantitatively characterizing multivariate epigenetic landscapes in many cell types, tissues or conditions. The method
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10 accounts for position dependent epigenetic events and detects local cell type relationships, which not only help to improve
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11 the accuracy of annotating functional classes of DNA sequences, but also reveal cell type constitutive and specific loci.
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12 The method utilizes Bayesian non-parametric techniques to automatically identify the best model size fitting to the data so
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13 users do not have to specify the number of states. On the other hand, users can still specify the number of states if desired.
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14 remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/epigenetics/ideas
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15 type: unrestricted
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16 categories:
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17 - Epigenetics
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