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changeset 179:f32f15562a82 draft

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Uploaded
author greg
date Thu, 25 Jan 2018 13:51:07 -0500
parents 12168e1e4859
children 15bd502e6a0c
files ideas.R
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/ideas.R	Thu Jan 25 13:50:59 2018 -0500
+++ b/ideas.R	Thu Jan 25 13:51:07 2018 -0500
@@ -360,7 +360,7 @@
     windows_by_chrom = NULL;
 } else {
     # Read chromosome_windows.txt into memory.
-    windows_by_chrom = get_windows_by_chrom(chromosome_windows);
+    windows_by_chrom = get_windows_by_chrom(opt$chromosome_windows);
 }
 base_cmd = get_base_cmd(opt$ideas_input_config, opt$chrom_bed_input, opt$training_iterations, opt$bychr, opt$hp,
             opt$standardize_datasets, opt$log2, opt$max_states, opt$initial_states, opt$max_position_classes,