# HG changeset patch
# User greg
# Date 1516906267 18000
# Node ID f32f15562a82d32c661ce2b858a6ae5081cc93a2
# Parent  12168e1e485998bfcf7d8664925ed4ccf9a5e7bf
Uploaded

diff -r 12168e1e4859 -r f32f15562a82 ideas.R
--- a/ideas.R	Thu Jan 25 13:50:59 2018 -0500
+++ b/ideas.R	Thu Jan 25 13:51:07 2018 -0500
@@ -360,7 +360,7 @@
     windows_by_chrom = NULL;
 } else {
     # Read chromosome_windows.txt into memory.
-    windows_by_chrom = get_windows_by_chrom(chromosome_windows);
+    windows_by_chrom = get_windows_by_chrom(opt$chromosome_windows);
 }
 base_cmd = get_base_cmd(opt$ideas_input_config, opt$chrom_bed_input, opt$training_iterations, opt$bychr, opt$hp,
             opt$standardize_datasets, opt$log2, opt$max_states, opt$initial_states, opt$max_position_classes,