Mercurial > repos > greg > ideas
changeset 62:cf0fbd58feb4 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 24 Aug 2017 07:41:00 -0400 |
| parents | d89f1a065d5c |
| children | 2321d1e6237d |
| files | ideas.xml |
| diffstat | 1 files changed, 4 insertions(+), 10 deletions(-) [+] |
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--- a/ideas.xml Wed Aug 23 15:11:44 2017 -0400 +++ b/ideas.xml Thu Aug 24 07:41:00 2017 -0400 @@ -19,13 +19,9 @@ #if str($input_type) == "datasets": #set cell_type_epigenetic_factor_cond = $input_type_cond.cell_type_epigenetic_factor_cond #set cell_type_epigenetic_factor = $cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor - #if str($cell_type_epigenetic_factor) == "extract": - cp '$extract_prep_input_config' $prep_input_config && - #else: - cp '$manual_prep_input_config' $prep_input_config && - #end if #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window + cp '$prep_input_config' $prep_input_config && prepMat $prep_input_config #if str($specify_genomic_window) == "yes": @@ -114,15 +110,13 @@ && mv ./*.state $output_state ]]></command> <configfiles> - <configfile name="manual_prep_input_config"><![CDATA[ + <configfile name="prep_input_config"><![CDATA[ +#import os #if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "manual": #for $input_items in $input_type_cond.cell_type_epigenetic_factor_cond.input_repeat: ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input} #end for -#end if]]></configfile> - <configfile name="extract_prep_input_config"><![CDATA[ -#import os -#if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "extract": +#else if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "extract": #set $cell_type_epigenetic_factor_cond = $input_type_cond.cell_type_epigenetic_factor_cond #set $input_name_positions = $cell_type_epigenetic_factor_cond.input_name_positions #for $i in $cell_type_epigenetic_factor_cond.input: