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changeset 156:7efdaa2e0bf1 draft

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Uploaded
author greg
date Fri, 12 Jan 2018 13:59:12 -0500
parents f70a86b6c6e0
children b63f2ae4261a
files ideas.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/ideas.xml	Fri Jan 12 13:46:24 2018 -0500
+++ b/ideas.xml	Fri Jan 12 13:59:12 2018 -0500
@@ -179,9 +179,13 @@
     #end if
 #end if
 #if str($perform_training) == "yes":
+    #set heatmaps_input_dir = $output_training_dir
     && mv ./*.para0 '$output_training_dir'
+    && for file in $output_training_dir/*.para0 do mv "$file" "${file/.para0/para}" done
     && mv ./*.profile0 '$output_training_dir'
+    && for file in $output_training_dir/*.profile0 do mv "$file" "${file/.profile0/profile}" done
 #else:
+    #set heatmaps_input_dir = $output_txt_dir
     && mv ./*.cluster '$output_txt_dir'
     && mv ./*.para '$output_txt_dir'
     && mv ./*.profile '$output_txt_dir'
@@ -189,7 +193,7 @@
 #end if
 #if str($output_heatmaps) == "yes":
     && Rscript '$__tool_directory__/create_heatmaps.R'
-    --input_dir '$output_txt_dir'
+    --input_dir '$heatmaps_input_dir'
     --output_dir '$output_pdf_dir'
     --script_dir '$__tool_directory__'
 #end if