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diff ideas.xml @ 23:64c372086d41 draft

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Uploaded
author greg
date Fri, 11 Aug 2017 09:47:39 -0400
parents a70690dcf9ff
children 28201e1f1633
line wrap: on
line diff
--- a/ideas.xml	Fri Aug 11 09:39:53 2017 -0400
+++ b/ideas.xml	Fri Aug 11 09:47:39 2017 -0400
@@ -27,8 +27,9 @@
     #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
     #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
     #if str($specify_genomic_window) == 'yes':
-        --bed '$bed_input'
+        -bed '$bed_input'
     #else:
+        -bed $tmp_dir/*.bed
         -gsz '$chromInfo'
         -wsz $specify_genomic_window_cond.window_size
         #set restrict_chromosomes = $specify_genomic_window_cond.restrict_chromosomes_cond.restrict_chromosomes