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comparison ideas.xml @ 23:64c372086d41 draft

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Uploaded
author greg
date Fri, 11 Aug 2017 09:47:39 -0400
parents a70690dcf9ff
children 28201e1f1633
comparison
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22:f8e36f4b71c7 23:64c372086d41
25 #if str($input_type) == 'datasets': 25 #if str($input_type) == 'datasets':
26 '$build_config_file' 26 '$build_config_file'
27 #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond 27 #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
28 #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window 28 #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
29 #if str($specify_genomic_window) == 'yes': 29 #if str($specify_genomic_window) == 'yes':
30 --bed '$bed_input' 30 -bed '$bed_input'
31 #else: 31 #else:
32 -bed $tmp_dir/*.bed
32 -gsz '$chromInfo' 33 -gsz '$chromInfo'
33 -wsz $specify_genomic_window_cond.window_size 34 -wsz $specify_genomic_window_cond.window_size
34 #set restrict_chromosomes = $specify_genomic_window_cond.restrict_chromosomes_cond.restrict_chromosomes 35 #set restrict_chromosomes = $specify_genomic_window_cond.restrict_chromosomes_cond.restrict_chromosomes
35 #if str($restrict_chromosomes) == 'yes': 36 #if str($restrict_chromosomes) == 'yes':
36 #set chroms = [] 37 #set chroms = []