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comparison ideas.xml @ 156:7efdaa2e0bf1 draft

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Uploaded
author greg
date Fri, 12 Jan 2018 13:59:12 -0500
parents f70a86b6c6e0
children b63f2ae4261a
comparison
equal deleted inserted replaced
155:f70a86b6c6e0 156:7efdaa2e0bf1
177 --save_ideas_log $save_ideas_log 177 --save_ideas_log $save_ideas_log
178 --output_log '$output_log' 178 --output_log '$output_log'
179 #end if 179 #end if
180 #end if 180 #end if
181 #if str($perform_training) == "yes": 181 #if str($perform_training) == "yes":
182 #set heatmaps_input_dir = $output_training_dir
182 && mv ./*.para0 '$output_training_dir' 183 && mv ./*.para0 '$output_training_dir'
184 && for file in $output_training_dir/*.para0 do mv "$file" "${file/.para0/para}" done
183 && mv ./*.profile0 '$output_training_dir' 185 && mv ./*.profile0 '$output_training_dir'
186 && for file in $output_training_dir/*.profile0 do mv "$file" "${file/.profile0/profile}" done
184 #else: 187 #else:
188 #set heatmaps_input_dir = $output_txt_dir
185 && mv ./*.cluster '$output_txt_dir' 189 && mv ./*.cluster '$output_txt_dir'
186 && mv ./*.para '$output_txt_dir' 190 && mv ./*.para '$output_txt_dir'
187 && mv ./*.profile '$output_txt_dir' 191 && mv ./*.profile '$output_txt_dir'
188 && mv ./*.state '$output_txt_dir' 192 && mv ./*.state '$output_txt_dir'
189 #end if 193 #end if
190 #if str($output_heatmaps) == "yes": 194 #if str($output_heatmaps) == "yes":
191 && Rscript '$__tool_directory__/create_heatmaps.R' 195 && Rscript '$__tool_directory__/create_heatmaps.R'
192 --input_dir '$output_txt_dir' 196 --input_dir '$heatmaps_input_dir'
193 --output_dir '$output_pdf_dir' 197 --output_dir '$output_pdf_dir'
194 --script_dir '$__tool_directory__' 198 --script_dir '$__tool_directory__'
195 #end if 199 #end if
196 ]]></command> 200 ]]></command>
197 <configfiles> 201 <configfiles>