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comparison ideas.xml @ 172:473a089c5fb6 draft

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Uploaded
author greg
date Thu, 25 Jan 2018 09:48:20 -0500
parents 445f67ea18f6
children 843bfa2dff2c
comparison
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171:445f67ea18f6 172:473a089c5fb6
13 #set output_pdf_dir = "output_pdf_dir" 13 #set output_pdf_dir = "output_pdf_dir"
14 #set output_txt_dir = "output_txt_dir" 14 #set output_txt_dir = "output_txt_dir"
15 #set output_training_dir = "output_training_dir" 15 #set output_training_dir = "output_training_dir"
16 #set windows_positions_by_chroms_config = "windows_positions_by_chroms_config.txt" 16 #set windows_positions_by_chroms_config = "windows_positions_by_chroms_config.txt"
17 #set perform_training = $perform_training_cond.perform_training 17 #set perform_training = $perform_training_cond.perform_training
18 #if str($output_heatmaps) == "yes":
19 mkdir '$output_pdf_dir' &&
20 #end if
21 #if str($perform_training) == "yes":
22 #set output_dir = $output_training_dir
23 mkdir '$output_training_dir' &&
24 #else:
25 #set output_dir = $output_txt_dir
26 mkdir '$output_txt_dir' &&
27 #end if
18 && Rscript '$__tool_directory__/ideas.R' 28 && Rscript '$__tool_directory__/ideas.R'
19 --burnin_num $burnin_num 29 --burnin_num $burnin_num
20 #if str($bychr) == "true": 30 #if str($bychr) == "true":
21 --bychr true 31 --bychr true
22 #end if 32 #end if