annotate icqsol_compose_shapes.py @ 0:36f5fa5bd6d9 draft

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author greg
date Sat, 14 Nov 2015 14:06:46 -0500
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children e3350521105e
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1 #!/usr/bin/env python
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2 import argparse
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3 import shutil
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5 import icqsol_utils
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6 from icqsol.shapes.icqShapeManager import ShapeManager
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8 # Parse Command Line.
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9 parser = argparse.ArgumentParser()
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10 parser.add_argument( '--expression', dest='expression', help='Composition expression' )
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11 parser.add_argument( '--shape_dataset', dest='shape_datasets', action='append', nargs=4, help='Shape datasets selected from history' )
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12 parser.add_argument( '--output', dest='output', help='Output dataset' )
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13 parser.add_argument( '--output_vtk_type', dest='output_vtk_type', help='Output file format and type' )
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15 args = parser.parse_args()
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17 tmp_dir = icqsol_utils.get_temp_dir()
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18 shape_tuples = []
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19 shape_mgr = ShapeManager()
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21 # Load the shapes.
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22 for ( expression_var, dataset_path, galaxy_ext, vtk_dataset_type ) in args.shape_datasets:
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23 # Define the file format and type.
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24 format, file_type = icqsol_utils.get_format_and_type( galaxy_ext )
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25 if format == 'vtk':
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26 shape_mgr.setReader( file_format=format, vtk_dataset_type=vtk_dataset_type )
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27 else:
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28 shape_mgr.setReader( file_format=format )
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29 icqsol_path = icqsol_utils.get_input_file_path( tmp_dir, dataset_path, format )
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30 shape_tuple = ( expression_var, shape_mgr.loadAsShape( icqsol_path ) )
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31 shape_tuples.append( shape_tuple )
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33 # Define the output file format and type.
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34 output_format, output_file_type = icqsol_utils.get_format_and_type( args.output_vtk_type )
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35 tmp_output_path = icqsol_utils.get_temporary_file_path( tmp_dir, output_format )
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37 shape_mgr.setWriter( file_format=output_format, vtk_dataset_type=icqsol_utils.POLYDATA )
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39 # Compose the shapes.
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40 composite_shape = shape_mgr.composeShapes( shape_tuples, args.expression )
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42 # Save the output.
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43 shape_mgr.saveShape( shape=composite_shape, file_name=tmp_output_path, file_type=output_file_type )
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44 shutil.move( tmp_output_path, args.output )