Mercurial > repos > greg > icqsol_compose_shapes
view icqsol_compose_shapes.py @ 0:36f5fa5bd6d9 draft
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author | greg |
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date | Sat, 14 Nov 2015 14:06:46 -0500 |
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children | e3350521105e |
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#!/usr/bin/env python import argparse import shutil import icqsol_utils from icqsol.shapes.icqShapeManager import ShapeManager # Parse Command Line. parser = argparse.ArgumentParser() parser.add_argument( '--expression', dest='expression', help='Composition expression' ) parser.add_argument( '--shape_dataset', dest='shape_datasets', action='append', nargs=4, help='Shape datasets selected from history' ) parser.add_argument( '--output', dest='output', help='Output dataset' ) parser.add_argument( '--output_vtk_type', dest='output_vtk_type', help='Output file format and type' ) args = parser.parse_args() tmp_dir = icqsol_utils.get_temp_dir() shape_tuples = [] shape_mgr = ShapeManager() # Load the shapes. for ( expression_var, dataset_path, galaxy_ext, vtk_dataset_type ) in args.shape_datasets: # Define the file format and type. format, file_type = icqsol_utils.get_format_and_type( galaxy_ext ) if format == 'vtk': shape_mgr.setReader( file_format=format, vtk_dataset_type=vtk_dataset_type ) else: shape_mgr.setReader( file_format=format ) icqsol_path = icqsol_utils.get_input_file_path( tmp_dir, dataset_path, format ) shape_tuple = ( expression_var, shape_mgr.loadAsShape( icqsol_path ) ) shape_tuples.append( shape_tuple ) # Define the output file format and type. output_format, output_file_type = icqsol_utils.get_format_and_type( args.output_vtk_type ) tmp_output_path = icqsol_utils.get_temporary_file_path( tmp_dir, output_format ) shape_mgr.setWriter( file_format=output_format, vtk_dataset_type=icqsol_utils.POLYDATA ) # Compose the shapes. composite_shape = shape_mgr.composeShapes( shape_tuples, args.expression ) # Save the output. shape_mgr.saveShape( shape=composite_shape, file_name=tmp_output_path, file_type=output_file_type ) shutil.move( tmp_output_path, args.output )