Mercurial > repos > greg > gene_family_phylogeny_builder

changeset 56:178971bba68f draft

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Uploaded
author greg
date Wed, 13 Dec 2017 14:10:08 -0500
parents 8013d394c525
children a996421f4eea
files gene_family_phylogeny_builder.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_phylogeny_builder.xml	Mon Oct 30 09:05:37 2017 -0400
+++ b/gene_family_phylogeny_builder.xml	Wed Dec 13 14:10:08 2017 -0500
@@ -42,7 +42,11 @@
 --min_orthogroup_size $min_orthogroup_size
 --max_orthogroup_size $max_orthogroup_size
 --num_threads \${GALAXY_SLOTS:-4}
-&>proc.log
+&>gene_family_phylogeny_builder_log.txt;
+if [[ $? -ne 0 ]]; then
+    find geneFamilyPhylogenies_dir -type d -maxdepth 1 -exec cp gene_family_phylogeny_builder_log.txt {} \;
+    exit 1;
+fi
     ]]></command>
     <inputs>
         <param name="input" format="fasta" type="data_collection" collection_type="list" label="Proteins orthogroup alignments" />