# HG changeset patch
# User greg
# Date 1513192208 18000
# Node ID 178971bba68f11de5698d6a66456e4230056e224
# Parent  8013d394c5253b7e03ee66b87af1c4c7b67103df
Uploaded

diff -r 8013d394c525 -r 178971bba68f gene_family_phylogeny_builder.xml
--- a/gene_family_phylogeny_builder.xml	Mon Oct 30 09:05:37 2017 -0400
+++ b/gene_family_phylogeny_builder.xml	Wed Dec 13 14:10:08 2017 -0500
@@ -42,7 +42,11 @@
 --min_orthogroup_size $min_orthogroup_size
 --max_orthogroup_size $max_orthogroup_size
 --num_threads \${GALAXY_SLOTS:-4}
-&>proc.log
+&>gene_family_phylogeny_builder_log.txt;
+if [[ $? -ne 0 ]]; then
+    find geneFamilyPhylogenies_dir -type d -maxdepth 1 -exec cp gene_family_phylogeny_builder_log.txt {} \;
+    exit 1;
+fi
     ]]></command>
     <inputs>
         <param name="input" format="fasta" type="data_collection" collection_type="list" label="Proteins orthogroup alignments" />