Mercurial > repos > greg > gene_family_integrator

changeset 31:435b622bae05 draft

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Uploaded
author greg
date Wed, 13 Dec 2017 14:09:49 -0500
parents 58cbad7dc6d1
children 2acee1a5d3c5
files gene_family_integrator.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_integrator.xml	Mon Oct 30 09:02:31 2017 -0400
+++ b/gene_family_integrator.xml	Wed Dec 13 14:09:49 2017 -0500
@@ -18,7 +18,11 @@
 --orthogroup_fasta '$input_dir'
 --scaffold '$scaffold.fields.path'
 --method $method
-&>proc.log
+&>gene_family_integrator_log.txt;
+if [[ $? -ne 0 ]]; then
+    cp gene_family_integrator_log.txt integratedGeneFamilies_dir;
+    exit 1;
+fi
     ]]></command>
     <inputs>
         <param name="input" format="fasta" type="data_collection" collection_type="list" label="Classified orthogroup fasta files" />