# HG changeset patch
# User greg
# Date 1513192189 18000
# Node ID 435b622bae056c15688668127bd4313d6376199c
# Parent  58cbad7dc6d158d18ccb634be4104769f0f3caee
Uploaded

diff -r 58cbad7dc6d1 -r 435b622bae05 gene_family_integrator.xml
--- a/gene_family_integrator.xml	Mon Oct 30 09:02:31 2017 -0400
+++ b/gene_family_integrator.xml	Wed Dec 13 14:09:49 2017 -0500
@@ -18,7 +18,11 @@
 --orthogroup_fasta '$input_dir'
 --scaffold '$scaffold.fields.path'
 --method $method
-&>proc.log
+&>gene_family_integrator_log.txt;
+if [[ $? -ne 0 ]]; then
+    cp gene_family_integrator_log.txt integratedGeneFamilies_dir;
+    exit 1;
+fi
     ]]></command>
     <inputs>
         <param name="input" format="fasta" type="data_collection" collection_type="list" label="Classified orthogroup fasta files" />