Mercurial > repos > greg > gene_family_integrator

changeset 15:31042dc87180 draft

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Uploaded
author greg
date Fri, 05 May 2017 09:33:20 -0400
parents 0dd84595cf37
children 27c0651f04e3
files macros.xml
diffstat 1 files changed, 7 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri May 05 09:33:13 2017 -0400
+++ b/macros.xml	Fri May 05 09:33:20 2017 -0400
@@ -26,21 +26,18 @@
             <requirement type="package" version="0.8">plant_tribes_kaks_analysis</requirement>
         </requirements>
     </xml>
+    <xml name="requirements_ks_distribution">
+        <requirements>
+            <requirement type="package" version="1.3.0">r-optparse</requirement>
+        </requirements>
+    </xml>
     <xml name="requirements_gene_family_phylogeny_builder">
         <requirements>
             <requirement type="package" version="0.8">plant_tribes_gene_family_phylogeny_builder</requirement>
         </requirements>
     </xml>
-    <xml name="stdio">
-        <stdio>
-            <exit_code range="1:"/>
-            <exit_code range=":-1"/>
-            <regex match="Error:"/>
-            <regex match="Exception:"/>
-        </stdio>
-    </xml>
     <xml name="param_codon_alignments">
-        <param name="codon_alignments" type="select" label="Construct orthogroup multiple codon alignments">
+        <param name="codon_alignments" type="select" label="Codon alignments">
             <option value="yes" selected="true">Yes</option>
             <option value="no">No</option>
         </param>
@@ -84,7 +81,7 @@
             </param>
             <when value="mafft" />
             <when value="pasta">
-                <param name="pasta_iter_limit" type="integer" value="3" min="1" label="Maximum number of iterations that the PASTA algorithm will execute" />
+                <param name="pasta_iter_limit" type="integer" value="3" min="1" label="PASTA iteration limit" />
             </when>
         </conditional>
     </xml>