Mercurial > repos > greg > gene_family_integrator

changeset 19:1dee3b4be156 draft

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Uploaded
author greg
date Mon, 22 May 2017 15:22:01 -0400
parents 2aef84b19da6
children 4234f6791a4a
files gene_family_integrator.xml
diffstat 1 files changed, 9 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_integrator.xml	Mon May 22 15:21:47 2017 -0400
+++ b/gene_family_integrator.xml	Mon May 22 15:22:01 2017 -0400
@@ -55,18 +55,23 @@
         </conditional>
     </inputs>
     <outputs>
-        <data name="output_ptortho" format="ptortho" label="Integrated gene family clusters on ${on_string}">
+        <data name="output_ptortho" format="ptortho" label="${tool.name} (integrated gene family clusters) on ${on_string}">
             <filter>input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['orthogroup_fna'] == 'no')</filter>
         </data>
-        <data name="output_ptorthocs" format="ptorthocs" label="Integrated gene family clusters and corresponding coding sequences on ${on_string}">
+        <data name="output_ptorthocs" format="ptorthocs" label="${tool.name} (integrated gene family clusters and corresponding coding sequences) on ${on_string}">
             <filter>input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['orthogroup_fna'] == 'yes'</filter>
         </data>
     </outputs>
     <tests>
-        <!-- Test framework does not currently support inputs whose associated extra_files_path contains files to be analyzed.
         <test>
+            <param name="input_format" value="ptorthocs"/>
+            <param name="input_ptorthocs" value="input.ptorthocs" ftype="ptorthocs"/>
+            <param name="scaffold" value="22Gv1.1"/>
+            <param name="method" value="orthomcl"/>
+            <param name="classifier" value="both"/>
+            <param name="orthogroup_fna" value="yes"/>
+            <output name="output_ptorthocs" file="output.ptorthocs" ftype="ptorthocs"/>
         </test>
-        -->
     </tests>
     <help>
 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary