Mercurial > repos > greg > gene_family_classifier

changeset 50:a3b7f34ad3f7 draft

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Uploaded
author greg
date Wed, 08 Feb 2017 11:17:10 -0500
parents 539a92a13168
children 3b2d35b75268
files gene_family_classifier.xml
diffstat 1 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_classifier.xml	Wed Feb 08 11:12:12 2017 -0500
+++ b/gene_family_classifier.xml	Wed Feb 08 11:17:10 2017 -0500
@@ -96,13 +96,15 @@
                 #else:
                     && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgf
                 #end if
-                && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
+                #if $os.path.exists($orthogroups_fasta_src_dir) and len($os.listdir($orthogroups_fasta_src_dir)) > 0:
+                    && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir
+                #end if
             #end if
 
             #if $single_copy_orthogroup:
                 && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco
-                #if len($os.listdir($single_copy_fasta_src_dir)) > 0:
-                    && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true
+                #if $os.path.exists($single_copy_fasta_src_dir) and len($os.listdir($single_copy_fasta_src_dir)) > 0:
+                    && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir
                 #end if
             #end if
         ]]>