# HG changeset patch
# User greg
# Date 1486570630 18000
# Node ID a3b7f34ad3f7c3c85c76433806214ab2098d96a7
# Parent  539a92a1316859888899a1d3d99d81186f3d0893
Uploaded

diff -r 539a92a13168 -r a3b7f34ad3f7 gene_family_classifier.xml
--- a/gene_family_classifier.xml	Wed Feb 08 11:12:12 2017 -0500
+++ b/gene_family_classifier.xml	Wed Feb 08 11:17:10 2017 -0500
@@ -96,13 +96,15 @@
                 #else:
                     && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgf
                 #end if
-                && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
+                #if $os.path.exists($orthogroups_fasta_src_dir) and len($os.listdir($orthogroups_fasta_src_dir)) > 0:
+                    && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir
+                #end if
             #end if
 
             #if $single_copy_orthogroup:
                 && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco
-                #if len($os.listdir($single_copy_fasta_src_dir)) > 0:
-                    && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true
+                #if $os.path.exists($single_copy_fasta_src_dir) and len($os.listdir($single_copy_fasta_src_dir)) > 0:
+                    && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir
                 #end if
             #end if
         ]]>