Mercurial > repos > greg > gene_family_classifier
changeset 43:8d1dbff42659 draft
Uploaded
author | greg |
---|---|
date | Mon, 06 Feb 2017 11:32:27 -0500 |
parents | 7ba3c31095fb |
children | 46f43a90492a |
files | gene_family_classifier.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/gene_family_classifier.xml Mon Feb 06 11:05:33 2017 -0500 +++ b/gene_family_classifier.xml Mon Feb 06 11:32:27 2017 -0500 @@ -80,11 +80,11 @@ #if $create_ortho_sequences: #if $create_corresponding_coding_sequences: && echo "#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgfcs - && echo -e "#Size"\t\t"File" >> $output_ptcgfcs + && echo -e "#Size\t\tFile" >> $output_ptcgfcs && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t"$9}' >> $output_ptcgfcs #else: && echo "#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgf - && echo -e "#Size"\t\t"File" >> $output_ptcgf + && echo -e "#Size\t\tFile" >> $output_ptcgf && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t"$9}' >> $output_ptcgf #end if && mv $orthogroups_fasta_src_dir/* $dest_dir || true